DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1909 and pins

DIOPT Version :10

Sequence 1:NP_651928.1 Gene:CG1909 / 43800 FlyBaseID:FBgn0039911 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_524999.2 Gene:pins / 53569 FlyBaseID:FBgn0040080 Length:658 Species:Drosophila melanogaster


Alignment Length:523 Identity:101/523 - (19%)
Similarity:200/523 - (38%) Gaps:99/523 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 GRRLYEQNNQTEAVRTWRSALK-GTCQREDCFQLLGYLYQAHMDWGKFREAIEFSHQQLGISEEL 164
            |.||.:..:....|..:::|:: ||........:...|..|:...|.:.:|:::....|.:::.:
  Fly    50 GERLCKAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 114

  Fly   165 DSPNMRAETYLNLSRAHASLGGL-ERSLSYARH-SLYNECGTKCRSGLVHLTVARVYLEMG---- 223
            :.....|::..||......:|.. |.::...|| :|..:.|.:...|.....:..||...|    
  Fly   115 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLG 179

  Fly   224 -------------GFSRALEGLQGAYKIATAIGDPSLELQVYVALSELFGRLQDNDKSATYASKA 275
                         ..:||:|..|...|:...:||...:.:....|...:..|.|...:..:..:.
  Fly   180 QRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 244

  Fly   276 YDLSRSLQLGDLNSCHHRAALLRMAVSLRKQ----GELGDAQDYCKEATKLSLISGDQATYTRSI 336
            ..::|  :.||      |||..|...:|...    |:..||.::.|....|::..|::....:|.
  Fly   245 LRIAR--EFGD------RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSC 301

  Fly   337 RVMGDIYRNKMDMDRAFRQYEQAMGTSASLGDRMAQMEAMDGAARCLETLRLQNKI-CNCRPLEF 400
            ..:|:.|....:.:.|...:.:.:..:..||||:.:..|      |.......:.| .:.|.|::
  Fly   302 YSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA------CWSLGNAHSAIGGHERALKY 360

  Fly   401 NTRLLEVASSIGAKFLVRKIRCRLALIYRALG---------DEDQYNT---HFRLANQTDAALGL 453
            ..:.|::|..:.........|..::.:.:.||         :|:..:|   |....||:|.:.  
  Fly   361 AEQHLQLAKELHDPVGESTARVNISDLRKLLGMPDSEPSPTEEEARSTASDHSASGNQSDGSE-- 423

  Fly   454 NCGACGELLGLRPENLEALPCAHI-----------LHARCA--------YEILRRREKNA--PRS 497
              .:.|.::.:|.:::|.|....|           |.|:..        :|:|.|.:...  .:.
  Fly   424 --NSQGRMVRVRRQSMEQLDLIKITPDGKRMQEEKLRAQATRKAKDDDFFEMLSRSQSKRMDDQR 486

  Fly   498 CPACNKLISSRTHFCGSVPVESESTDRCVTAASTFNTNSLSVD--GLLGINSDILLPSAAFCYVK 560
            |       |.:.:..|:..|.:.:|.:.:.     ..|||.||  .|.|:.|    ||:|     
  Fly   487 C-------SIKVNPAGAPAVATGATRKPLV-----QQNSLFVDPTNLPGLKS----PSSA----- 530

  Fly   561 NPA 563
            ||:
  Fly   531 NPS 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1909NP_651928.1 Rapsyn_N 89..168 CDD:431369 12/67 (18%)
LapB 92..386 CDD:442196 59/308 (19%)
TPR repeat 94..122 CDD:276809 5/20 (25%)
TPR repeat 127..164 CDD:276809 5/36 (14%)
TPR repeat 171..198 CDD:276809 7/28 (25%)
TPR repeat 211..237 CDD:276809 7/42 (17%)
TPR repeat 248..278 CDD:276809 3/29 (10%)
TPR repeat 293..321 CDD:276809 9/31 (29%)
TPR repeat 333..360 CDD:276809 4/26 (15%)
RING-H2_Rapsyn 452..503 CDD:438141 11/71 (15%)
pinsNP_524999.2 TPR 50..261 CDD:440225 42/218 (19%)
TPR repeat 83..109 CDD:276809 4/25 (16%)
TPR repeat 120..150 CDD:276809 7/29 (24%)
TPR 162..>373 CDD:440225 42/224 (19%)
TPR repeat 162..199 CDD:276809 5/36 (14%)
TPR repeat 219..246 CDD:276809 3/26 (12%)
TPR repeat 251..291 CDD:276809 12/45 (27%)
TPR repeat 296..326 CDD:276809 4/29 (14%)
TPR repeat 338..366 CDD:276809 5/33 (15%)
GoLoco 468..488 CDD:460481 4/26 (15%)
GoLoco 552..573 CDD:460481
GoLoco 613..633 CDD:460481
Blue background indicates that the domain is not in the aligned region.

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