DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1909 and Rapsn

DIOPT Version :9

Sequence 1:NP_651928.1 Gene:CG1909 / 43800 FlyBaseID:FBgn0039911 Length:606 Species:Drosophila melanogaster
Sequence 2:XP_006234590.1 Gene:Rapsn / 362161 RGDID:1311592 Length:412 Species:Rattus norvegicus


Alignment Length:413 Identity:121/413 - (29%)
Similarity:213/413 - (51%) Gaps:19/413 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 KRKIERGRRLYEQNNQTEAVRTWRSALKGTCQREDCFQLLGYLYQAHMDWGKFREAIEFSHQQLG 159
            |::||:|.:||:.|...:|::.|...|:........|::||.|..||.:.|:::|.::|:..|:.
  Rat     7 KQQIEKGLQLYQSNQTEKALQVWMKVLEKGSDLVGRFRVLGCLVTAHSEMGRYKEMLKFAVVQID 71

  Fly   160 ISEELDSPNMRAETYLNLSRAHASLGGLERSLSYARHSLYNECGTKCRS---GLVHLTVARVYLE 221
            .:.||:..:...|:||||:|::..|....:::||.:..| ...||:..:   |.|.|::...:|.
  Rat    72 TARELEDADFLLESYLNLARSNEKLCEFHKTISYCKTCL-GLPGTRAGAQLGGQVSLSMGNAFLG 135

  Fly   222 MGGFSRALEGLQGAYKIATAIGDPSLELQVYVALSELFGRLQDNDKSATYASKAYDLSRSLQLGD 286
            :..|.:|||..:.|.:.|....|..||.:|..:|...:.:::|.:|:..:..||.:|......| 
  Rat   136 LSLFQKALESFEKALRYAHNNDDTMLECRVCCSLGSFYAQVKDYEKALFFPCKAAELVNDYGKG- 199

  Fly   287 LNSCHHRA-ALLRMAVSLRKQGELGDAQDYCKEATKLSLISGDQATYTRSIRVMGDIYRNKMDMD 350
             .|..:|| :...|||:.|..|.||.|.:.|:|:.|::|..||:......:....||:|::.|::
  Rat   200 -WSLKYRAMSQYHMAVAYRLLGHLGSAMECCEESMKIALQHGDRPLQALCLLCFADIHRSRGDLE 263

  Fly   351 RAFRQYEQAMGTSASLGDRMAQMEAMDGAARCLETLRLQNKICNCRPLEFNTRLLEVASSIGAKF 415
            .||.:|:.||.....:|:|:.|:..:.|.|:|....::.:|     .|:...:..::|..:|.|.
  Rat   264 TAFPRYDSAMSIMTEIGNRLGQVHVLLGVAKCWIARKVLDK-----ALDAIEKAQDLAEEVGNKL 323

  Fly   416 LVRKIRCRLALIYRALGDEDQYNTHFRLANQTDAALGLNCGACGELLGLRPENLEALPCAHILHA 480
            ...|:.|....|.|:.|.:.:...|....::......|.||.|||.:|.:...|:||||:||.|.
  Rat   324 SQLKLHCLSEGICRSKGLQRELRAHVVRFHECVEETELYCGLCGESIGEKNSRLQALPCSHIFHL 388

  Fly   481 RCAYEILRRREKNAPRSCPACNK 503
            ||.       :.|..||||.|.:
  Rat   389 RCL-------QNNGTRSCPNCRR 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1909NP_651928.1 SNAP 89..168 CDD:305195 22/72 (31%)
TPR repeat 94..122 CDD:276809 9/26 (35%)
TPR repeat 127..164 CDD:276809 10/36 (28%)
TPR repeat 171..198 CDD:276809 9/26 (35%)
TPR repeat 211..237 CDD:276809 8/25 (32%)
TPR repeat 248..278 CDD:276809 7/29 (24%)
TPR_12 249..322 CDD:290160 21/73 (29%)
TPR repeat 293..321 CDD:276809 12/28 (43%)
TPR repeat 333..360 CDD:276809 7/26 (27%)
RapsnXP_006234590.1 SNAP 1..80 CDD:420168 22/72 (31%)
TPR <9..239 CDD:223533 69/232 (30%)
TPR repeat 127..151 CDD:276809 7/23 (30%)
TPR repeat 156..192 CDD:276809 9/35 (26%)
TPR repeat 197..234 CDD:276809 14/38 (37%)
TPR_MalT <206..>318 CDD:407730 33/116 (28%)
TPR repeat 246..274 CDD:276809 8/27 (30%)
RING-H2_Rapsyn 360..404 CDD:319392 23/50 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166347458
Domainoid 1 1.000 50 1.000 Domainoid score I11437
eggNOG 1 0.900 - - E1_KOG1941
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3708
Inparanoid 1 1.050 196 1.000 Inparanoid score I3735
OMA 1 1.010 - - QHG46428
OrthoDB 1 1.010 - - D1245397at2759
OrthoFinder 1 1.000 - - FOG0008407
OrthoInspector 1 1.000 - - oto96645
orthoMCL 1 0.900 - - OOG6_109777
Panther 1 1.100 - - LDO PTHR46574
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X6398
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1514.810

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