DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ephrin and efnb3b

DIOPT Version :10

Sequence 1:NP_651927.1 Gene:Ephrin / 43799 FlyBaseID:FBgn0040324 Length:652 Species:Drosophila melanogaster
Sequence 2:NP_571881.1 Gene:efnb3b / 114378 ZFINID:ZDB-GENE-010618-3 Length:331 Species:Danio rerio


Alignment Length:420 Identity:99/420 - (23%)
Similarity:151/420 - (35%) Gaps:145/420 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 VTLLTLICMETVLLSTMSSCAKTFYMHWNTSNSIFRIDNTDHIIDVNKGNLAFEFDQVHIICPVY 258
            :.|:.|:.:..:..:.|..      ::||:.|..|. |:..:::....|      |::.:|||..
Zfish    12 ILLIFLVDLLGITATNMEP------IYWNSLNKRFS-DDKGYVLYPQIG------DRLDLICPSS 63

  Fly   259 EP--GTFENETEKYIIYNVSKVEY-ETCRITNADPRVIAICDKPQKLMFFTITFRPFTPQPGGLE 320
            :|  .....:.|.|.:|.||..|. :.|.:|.| |.::..||||...|.|||.|:.::|...|.|
Zfish    64 DPPGPRAPADYEYYKLYLVSSREQADRCEVTGA-PNLLLTCDKPNSDMRFTIKFQEYSPNLWGHE 127

  Fly   321 FLPGNDYYFISTS--SKDDLYRRIGGRCSTNNMKVVFKVCCAPEDNNKTTALSNSKSVTDTGGAI 383
            |...:||:.|:||  ::..|....||.|:|..||||.||..:|      ..|.......|:.|.|
Zfish   128 FKTNHDYFIIATSDGTRQGLESMRGGVCATQGMKVVLKVGQSP------YGLPAKSPKPDSAGRI 186

  Fly   384 -NVNIANNDESHVNSHGNNIAIGTNIGINGGQIIGGPQSAGIPINPLSGNNNING-IPTTINSNI 446
             |.|....:.:|                              |..|..|:...|| :|.   |||
Zfish   187 NNPNPGTGNSTH------------------------------PQIPPRGSGGENGPLPA---SNI 218

  Fly   447 DQFNRIPIQPNIIGNHVGTNAVGTGIVGGGGIILT--------------PGHAHGN------INM 491
                                ||..|..||...:|.              ..|:..:      .::
Zfish   219 --------------------AVIAGAAGGSAFLLLVTAVICVVCYRRRHAKHSESHHPPLSLSSL 263

  Fly   492 LQPGR---GGINGAYPGHHHIQTGIRINNVPTQHNYPSHKGNANSNI----NGNDDHH--HYNK- 546
            ..|.|   ||:.|.             ||          .|:..|:|    ..:|..:  ||.| 
Zfish   264 TSPKRGCGGGVGGG-------------NN----------NGSEPSDIIIPLRTSDSAYCPHYEKV 305

  Fly   547 -----HPNEVVKNEELTYNSGAATSDGNIF 571
                 ||..:|  :|:...|.|     ||:
Zfish   306 SGDYGHPVYIV--QEMPPQSPA-----NIY 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EphrinNP_651927.1 Ephrin_ectodomain 217..358 CDD:259861 49/145 (34%)
efnb3bNP_571881.1 Ephrin-B_Ectodomain 27..167 CDD:259897 50/153 (33%)

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