DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-VI and cadm1b

DIOPT Version :10

Sequence 1:NP_001036705.1 Gene:side-VI / 4379854 FlyBaseID:FBgn0083950 Length:1087 Species:Drosophila melanogaster
Sequence 2:NP_001428276.1 Gene:cadm1b / 562183 ZFINID:ZDB-GENE-080327-34 Length:420 Species:Danio rerio


Alignment Length:417 Identity:90/417 - (21%)
Similarity:155/417 - (37%) Gaps:108/417 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 HKEPAE--------LIINPVK--EKDAGNFRCRVDFKLSQTRNSNVNLEVVVPPTQPIIFNERRL 155
            ||..|:        |:.|.|.  |.:.....|||      ..|.:..::::.|..|.|.|.:.|.
Zfish    24 HKGAAQTTPVQGQNLVTNNVSVVEGETAIISCRV------KNNDDSVIQLLNPNRQTIYFRDVRP 82

  Fly   156 RIDSRAGPYEEGGSLEVTCVVYGGSPPPTVIWLMNGQLQNSVVDYTYDGAINSKLVVRNLSRIHQ 220
            ..|||.                              ||.|.        :.|..||..:...:..
Zfish    83 LKDSRF------------------------------QLVNF--------SDNELLVSLSNVSLSD 109

  Fly   221 HAVYTCQASNFHKKYVATNITIDLYLRPLLVEISFNNQPMSADRKYEIECQAIGSRPPAKITWWM 285
            ...|.||......:....:||:  .:.|....:....:.:|...:.||.|.|:||:|.:.|.|..
Zfish   110 EGRYVCQLYTDPPQEAYADITV--LVPPGNPILESREEIVSEGNETEITCTAMGSKPASTIKWMK 172

  Fly   286 GNLELHGHS--QKVSEDGNVSTSVLSITPTREDHGKALSCRATNELVRNGIRETAMKLNVFFIPT 348
            |:..|.|.:  :::.:.....||.|.:|.::||.|.|:.|...:..|::  .:....|.|.:.|.
Zfish   173 GDQPLQGEATVEELYDRMFTVTSRLRLTVSKEDDGVAVICIIDHPAVKD--FQAQKYLEVQYKPE 235

  Fly   349 LQLDLGSNLNPEDI-EEGDDVYFECKVHANPAAYKVVW-KHNHQIIQHNQRAGVIVSSGDLALQG 411
            :::.:|.   ||.: .||:::...||....|..:::.| |.:.....|     .:|:..||.::.
Zfish   236 VKIVVGF---PEGLTREGENLELTCKAKGKPQPHQINWLKVDDDFPSH-----ALVTGSDLFIEN 292

  Fly   412 VTRHQAGNYTCTASNVEGDGDSNVVELKVMYKPICRPDQKKIYGVARNEAAEIVCEVDAFPPPEN 476
            :.:...|.|.|.|||:.|:...:.    ::|          :|.|           :...|||  
Zfish   293 LNKSYNGTYRCVASNLVGEAYDDY----ILY----------VYDV-----------LTTTPPP-- 330

  Fly   477 FKWSFNNTAETFDMPQSGFRPHSAQGS 503
                   |..|.    |.|:...|.|:
Zfish   331 -------TTTTI----SAFQDSRADGA 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-VINP_001036705.1 IG_like 35..140 CDD:214653 11/48 (23%)
Ig_3 165..230 CDD:464046 9/64 (14%)
Ig 262..343 CDD:472250 23/82 (28%)
Ig strand B 266..270 CDD:409416 2/3 (67%)
Ig strand C 280..284 CDD:409416 1/3 (33%)
Ig strand F 320..325 CDD:409416 2/4 (50%)
Ig strand G 336..339 CDD:409416 0/2 (0%)
Ig_3 358..426 CDD:464046 17/69 (25%)
Ig_3 456..524 CDD:464046 10/48 (21%)
FN3 545..622 CDD:473895
cadm1bNP_001428276.1 None
Blue background indicates that the domain is not in the aligned region.

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