DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment side-VI and hbs

DIOPT Version :9

Sequence 1:NP_001036705.1 Gene:side-VI / 4379854 FlyBaseID:FBgn0083950 Length:1087 Species:Drosophila melanogaster
Sequence 2:NP_001286439.1 Gene:hbs / 44129 FlyBaseID:FBgn0029082 Length:1235 Species:Drosophila melanogaster


Alignment Length:955 Identity:201/955 - (21%)
Similarity:331/955 - (34%) Gaps:285/955 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 VNSSAQIKCDVGSSQADDKVLLVVWYKNNLPIYSYDTRGAHAGTPSHWRDEEVLEDRAVFRTHKE 103
            |..|.|:.|....|....:   :.|..|..|:                       |.:.::|   
  Fly   359 VGDSVQLSCVTAPSNPQAR---ISWSINGRPL-----------------------DNSTYKT--- 394

  Fly   104 PAELIINPVKEKDAG-----NFRCRVDFKLSQTR-------------NSNV----NLEVVVPPTQ 146
                    ....|.|     |....:|   ||:|             ..||    .:.|:.||:.
  Fly   395 --------TSSSDGGWVSSSNISLTID---SQSRTFIAVCHALNTELTQNVVGSHTVNVLYPPSP 448

  Fly   147 PII--FNERRLRIDSRAGPYEEGGSLEVTCVVYGGSPPPTVIWLMNGQLQNSVVDYTYDGAINSK 209
            |::  :|:..:.|        .|..|::.|...||:||||:.|..|.::.|: .....|..|.|:
  Fly   449 PLLTGYNDGDILI--------SGSILKLQCSSAGGNPPPTLQWYKNDKIINA-PSKLVDSKITSE 504

  Fly   210 L-VVRNLSRIHQHAVYTCQASNFHKKYVATNI------TIDLYLRPLLVEISFNNQPMSADRKYE 267
            | ::.|.|  ..:|:|.|:..|     .|.:|      |:.::..|..|:||...:.:....:.:
  Fly   505 LSLLVNAS--DNNAIYKCKVQN-----AAIDIPLFATKTLGVHFPPETVKISVVPKNLVPGIRAK 562

  Fly   268 IECQAIGSRPPAKITWWMGNLELHG---HSQKVSEDGNVSTSVLSITPTREDHGKALSCRATNEL 329
            :.|.:..|.|||||:||...:.:.|   .::.....|:|||..:.:..|::..|...:|::.||:
  Fly   563 LICDSSSSNPPAKISWWKDGIPVEGLNLANRPGLWGGSVSTLEMYVNITQDLDGIVYTCQSHNEV 627

  Fly   330 VRNGIRETAMKLNVFFIPTLQLDLGSNLNPEDIE----EGDDVYFECKVHANPAAYKVVWKHNHQ 390
            ::..:.|| :.|::.:.|..:       .|:...    ||...:.|.....||......|..:..
  Fly   628 LQRSVHET-ISLDILYPPKFE-------TPQSTTFVGVEGAPFHVELLASGNPMVITYTWTKDGL 684

  Fly   391 IIQHNQRAGV-IVSSGD-LALQGVTRHQAGNYTCTASNVEGDGDSNVVELKVM--YKPICRPDQK 451
            .|..|..:|. ::|.|. |.:..::|:.||.|.|.|.|.:|   :.::|::|.  |.|......:
  Fly   685 PISSNSLSGQRLISDGPRLNISRLSRNDAGVYICEALNSQG---TALLEIQVAVEYAPTITAVSE 746

  Fly   452 KIYGVARNEAAEIVCEVDAFP-PPENFKW-------------SFNN------------------- 483
            ....|| .|.|.:.|.:.|.| ...:.:|             ||.|                   
  Fly   747 GRSFVA-GEPAVLACHIQARPLEAAHVRWSRDGYDLATRTISSFENGTALLQIASVERSDIGNFT 810

  Fly   484 --------------------TAETFD------------------------MPQSGF--RPHSAQ- 501
                                ||...|                        .||..|  |.|... 
  Fly   811 CIVDNQRGAPAAQNVLLVVQTAPEIDHSPGFTRYAARLGVRAQLICRSLASPQPSFIWRRHGKDL 875

  Fly   502 --------------------GSTLTYTPVKEMDFGTIMCWADNNVGQQKEPCVFHLIAAGKPEAP 546
                                .|.|........|:|...|...|::||......|.  ...:|:||
  Fly   876 KMQRRNKFKSVERQVDALNFESALLIENTSPDDYGQYECVVRNSLGQASTTLEFS--KPSRPDAP 938

  Fly   547 TNCTVVNQTSDSLEVYCIEGFDGGMRQWFLMEIFDQHSGQLQANISAK--FAALSVTGLDAGRLF 609
            ....|.|.:...:::....||||||:.:|.:.: .||.......:.||  ...:|:.||..|..:
  Fly   939 LQLRVGNVSDTGVDLNWTPGFDGGMQTYFRLRL-KQHGEDKYKYVDAKPGHQNISLDGLKPGATY 1002

  Fly   610 RIYVYAVNGRGRSDAIALDGYTLKAAEKQTVALTSYKG----SAQSPDNFELTPILSIGIFVGIL 670
            ...|.|.|..|.|..:            ..:.||..||    ||:..:..||..::.|||....:
  Fly  1003 YFSVMAANEAGGSKFM------------PDIKLTLSKGSQPHSAEYTEKDELPNVMIIGITSAAM 1055

  Fly   671 VAIVCIGIGTIAALKLRSHKHQQQQKFVHPNAKFSRPGNLQIKDK------ISLPLS-------- 721
            |.:| :....:|...:|.....|.:         :.|.|..:..|      ..||::        
  Fly  1056 VLLV-LNAALVAWFVIRRQNKSQSE---------AEPSNDDVYSKDDSQSVYKLPITALQADVQK 1110

  Fly   722 -HSEEMYDEKNPDVVPYNEVDGEYKQKSATQTPSGHLSTTSEVEISCKPGST------------- 772
             .:...|..:|.|::.......:| |:|:..||...|         |.|..|             
  Fly  1111 KAAASTYLVENVDIIQSTAYPPKY-QESSMCTPPYPL---------CNPDFTRTLPNPKRHSQRN 1165

  Fly   773 SGTGIVQANSADSGTYQSSKDDELHYAELSLTNMPSGSSGASKKG 817
            |.||:::      |....||||.:..:.......||.:|....||
  Fly  1166 SATGMIE------GMQMRSKDDHMLISNGLYIPSPSPASSLVIKG 1204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-VINP_001036705.1 IG_like 35..140 CDD:214653 19/122 (16%)
Ig_3 157..230 CDD:290638 22/73 (30%)
IG_like 165..242 CDD:214653 24/83 (29%)
Ig 265..343 CDD:299845 22/80 (28%)
IG_like 267..343 CDD:214653 22/78 (28%)
IG_like 363..440 CDD:214653 21/82 (26%)
IGc2 364..429 CDD:197706 19/66 (29%)
IG_like 456..532 CDD:214653 27/175 (15%)
Ig_3 456..524 CDD:290638 24/167 (14%)
fn3 545..622 CDD:278470 23/78 (29%)
hbsNP_001286439.1 Ig 44..122 CDD:299845
IG_like 45..137 CDD:214653
Ig 153..231 CDD:299845
IG_like 258..342 CDD:214653
Ig 266..327 CDD:299845
IG_like 357..>414 CDD:214653 14/94 (15%)
Ig 360..427 CDD:299845 16/106 (15%)
Ig <468..526 CDD:299845 20/65 (31%)
I-set 547..633 CDD:254352 21/85 (25%)
Ig 556..631 CDD:299845 19/74 (26%)
I-set 644..735 CDD:254352 24/100 (24%)
IGc2 668..725 CDD:197706 16/56 (29%)
IG_like 751..829 CDD:214653 11/78 (14%)
IGc2 753..815 CDD:197706 9/61 (15%)
Ig 852..928 CDD:143165 13/75 (17%)
FN3 935..1017 CDD:238020 25/82 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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