DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-VI and sns

DIOPT Version :9

Sequence 1:NP_001036705.1 Gene:side-VI / 4379854 FlyBaseID:FBgn0083950 Length:1087 Species:Drosophila melanogaster
Sequence 2:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster


Alignment Length:1395 Identity:284/1395 - (20%)
Similarity:453/1395 - (32%) Gaps:530/1395 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 HADGFKPDGEILRVLVNSSAQIKCDVGSSQADDKVLLVVWYKNNLPI-YSYDTRG---------- 77
            :.:|:.. ||.||  ...:.::.|   .|:..:....::||||...| .:|.|.|          
  Fly   287 YIEGYSA-GETLR--RGQTVELMC---RSRGGNPPAQLIWYKNGSQIRMAYRTSGRLSENIYTFT 345

  Fly    78 AHAGTPSHWRDEEVLEDRAVFR------------------------TH----------------- 101
            |.||           :::|.||                        ||                 
  Fly   346 AEAG-----------DNKARFRCEASNVMSQNPLKAEVELSVLFAPTHVTVMGPTEARVGDIVPL 399

  Fly   102 -------KEPAEL----------------IINPVKEKDAG-------------NFRCRV------ 124
                   ..|||:                |::|    :.|             |.|..|      
  Fly   400 TCTTAPSNPPAEIKWMVGGRQVRNATSKTIVSP----EGGWTTTSNITAVVEPNKRSLVVICHGL 460

  Fly   125 DFKLSQTRNSNVNLEVVVPPTQPIIFNERRLRIDSRAGPYEEG-----GSLE-VTCVVYGGSPPP 183
            :.:|::...|...:.|:.||..|:|            ..|.||     ||:: :.||..||:|..
  Fly   461 NMQLTENVVSTHTINVLYPPAPPLI------------SGYMEGQIIPAGSVQKLLCVSSGGNPLA 513

  Fly   184 TVIWLMNGQLQNSVVDYTYDGAINSKL-VVRNLSRIHQHAVYTCQASNFHKKYVATNI------T 241
            |:.|..|.:..|||: ...|.:::::: ::.|:|  ...|.|.|:|||     .||.|      |
  Fly   514 TLTWYKNDKRINSVI-RAADKSVSAEITILANVS--DNQAQYRCEASN-----SATEIPLFQSTT 570

  Fly   242 IDLYLRPLLVEISFNNQPMSADRKYEIECQAIGSRPPAKITWWMGNLELHG---HSQKVSEDGNV 303
            :.::..|..|:|....:.:....:..|.|.:..|.||||::||...:.:.|   .|:.....|.|
  Fly   571 LSVHFAPETVKIRIEPEELRPGMEATIICDSSSSNPPAKLSWWKDGIPIEGINNTSKPGLWGGTV 635

  Fly   304 STSVLSITPTREDHGKALSCRATNELVRNGIRETAMKLNVFFIPTLQLDLGSNLNPEDIE----E 364
            ||....:..|:|.:|:..:|::.||.::....| |:.|:|.:.|..       :.|....    |
  Fly   636 STLEFRVNVTQEMNGQVYTCQSANEALQRSAHE-AVSLDVLYRPKF-------VPPPSSTAVGVE 692

  Fly   365 GDDVYFECKVHANPAAYKVVWKHNHQIIQHNQRAGVIVSSGDLALQGVTRHQAGNYTCTASNVEG 429
            |:.:....:..|||......|..:...|..:....:....|.|....:.|..||.|:|:|||.:|
  Fly   693 GESLQVSLQTRANPTPVTYKWTKDGTTIPQDGDHRIFADGGSLNFTRLHRDDAGIYSCSASNSQG 757

  Fly   430 DGDSNVVELKVMYKPICRPDQKKIYGVARNEAAEIVCEVDAFP-PPENFKW---SFNNTAET--- 487
            ....|:. :.|.|....:...:.|. |...|.|.:.|.|:..| ..|:.||   .::.|.:|   
  Fly   758 GATLNIT-VVVEYGTTIKSVSENIV-VNPGEDAMLSCTVEGKPLTEEHVKWERVGYDMTVKTSTT 820

  Fly   488 ----------------------------FDMP-----------------------------QSGF 495
                                        .|.|                             :.|.
  Fly   821 FANGTSYLHIKDAKREDVGNFRCVADNRVDNPTNRDILLIVKFAPEIAKTPTLLRAASGTGERGR 885

  Fly   496 RPHSAQGS------------------------------TLTY------TPVKEMDFGTIMCWADN 524
            .|..||||                              :|||      ..|...|:|...|.|.|
  Fly   886 LPCRAQGSPKPQFIWRQDKKDLPINRTYKYEVEERKIDSLTYESTLIVDKVAPADYGAYECVARN 950

  Fly   525 NVGQQKEPCVFHLIAAGKPEAPTNCTVVNQTSDSLEVYCIEGFDGGMRQWFLM-------EIFDQ 582
            .:|:..|  ...|....:|:.|.:..::|.|.|::.:....|||||::..:.:       |.:..
  Fly   951 ELGEAVE--TVRLEITSQPDPPLSLNILNVTHDTVTLAWTPGFDGGLKASYRVRYRMADREQYKY 1013

  Fly   583 HSGQLQANISAKFAALSVTGLDAGRLFRIYVYAVNGRGRSDAIALDGYTLKAAEKQTVALTSYKG 647
            ..|...::      .|::.||....|:...|.:.|..|:|..:.    .|..||.:.....|:..
  Fly  1014 IDGLPNSH------KLTIGGLRMNTLYLFSVMSWNELGQSSYLP----DLARAETKEAPPPSHPA 1068

  Fly   648 SA--QSPDNFELTPI------LSIGIFVGILVA-------------------------------- 672
            |:  ..|.....||:      |.:|:..||:|.                                
  Fly  1069 SSLGGGPPTTSQTPLGGTSGMLLVGVGAGIVVVLLNVFVIGCCLHKRNEKRLKRGLELMPAELTE 1133

  Fly   673 -------IVCIGIGTIAALKLRSHKHQQQQKFVHPNAKFSRPGNLQIKDKISLPLSHSE-EMYDE 729
                   :|.|||...|...|..:.......|||...|       ::.:..:.|...:. |||..
  Fly  1134 DSSNTPNLVIIGISLAAFGFLLVNASLVAWFFVHQRRK-------KVAETTNQPAKTATIEMYAP 1191

  Fly   730 KNPDVVPYNE-VDGEYKQKSATQTPSGHLSTTSEVEISCKPGSTSGTGIVQANSADSGTYQSSKD 793
            .:     ||: |.||            .||:.||     |..|.|          :.|:.|....
  Fly  1192 SS-----YNDTVTGE------------TLSSVSE-----KSESYS----------NEGSSQPEYI 1224

  Fly   794 DELHYAELSLTNMPSGSSGASKKGQPMGGVGVVQHVVQQQQQQQQGQVQHPHQLLGG-TLPHGSS 857
            ||:.....| |.:..||.....:.|..|.:.|:                :|:.::.. ||||   
  Fly  1225 DEVRKKAAS-TYLVEGSDMPPPRYQKDGTLPVI----------------YPNNVVNACTLPH--- 1269

  Fly   858 MRKLLPTIPATATLQRHKPNAG--------------GMQHPH-QHAPPPTYDY------------ 895
                          .||...:.              |:..|. ..||||...|            
  Fly  1270 --------------PRHNNGSAAIHMTRDDQMLISKGVYIPSPSPAPPPDGSYYNMNSDRYLSYP 1320

  Fly   896 --------DYFEEPTIYAQIDAYKTMQVDT--------GVVVAGVGAGAGS---GVNGAGASISS 941
                    |:..:|...|.:.......:.|        ...||.|..|:|:   |:......:..
  Fly  1321 PMEYPAALDFTAQPMPMAHLQPMTVTSLATNGGPTLIGNGSVAAVAGGSGTLRRGILRGVVGVPQ 1385

  Fly   942 PG-SHGTPSTVSPGTVQMY----------------------------TLPQHPGGYHTLPHNHHA 977
            |. :|.| |||....:||.                            |||:.|.|....|:    
  Fly  1386 PDVTHHT-STVGGSPMQMLHDLHPVNLSASTLTTSTTLNGSLPTATATLPRQPHGILKDPN---- 1445

  Fly   978 QQQMAGGPQNSASMMQMMQQQQQQQQQMHHHPASNMPPSYQQHQQQQQQQQMAHGQMLVSSNSSG 1042
                              :.:||||||                ||||||||:.|.|.|::::..|
  Fly  1446 ------------------RNKQQQQQQ----------------QQQQQQQQLQHQQQLLNASLVG 1476

  Fly  1043 LASTTAAVASPSSSLSGLS------GVGKS 1066
            :.   ..|::|..||..|:      |:|.:
  Fly  1477 VG---VPVSAPLGSLQILNLPPASGGLGNN 1503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-VINP_001036705.1 IG_like 35..140 CDD:214653 31/198 (16%)
Ig_3 157..230 CDD:290638 23/79 (29%)
IG_like 165..242 CDD:214653 27/89 (30%)
Ig 265..343 CDD:299845 24/80 (30%)
IG_like 267..343 CDD:214653 24/78 (31%)
IG_like 363..440 CDD:214653 19/80 (24%)
IGc2 364..429 CDD:197706 17/64 (27%)
IG_like 456..532 CDD:214653 29/175 (17%)
Ig_3 456..524 CDD:290638 27/167 (16%)
fn3 545..622 CDD:278470 18/83 (22%)
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653 18/95 (19%)
Ig 300..361 CDD:299845 16/74 (22%)
Ig 380..454 CDD:299845 10/77 (13%)
IG_like 490..573 CDD:214653 28/90 (31%)
Ig 501..560 CDD:299845 20/66 (30%)
Ig 584..666 CDD:299845 21/81 (26%)
IG_like 585..666 CDD:214653 21/80 (26%)
I-set 678..767 CDD:254352 21/96 (22%)
IGc2 692..757 CDD:197706 17/64 (27%)
Ig 788..849 CDD:143165 9/60 (15%)
Ig 885..960 CDD:143165 16/76 (21%)
FN3 967..1051 CDD:238020 20/89 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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