DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment side-VI and fred

DIOPT Version :9

Sequence 1:NP_001036705.1 Gene:side-VI / 4379854 FlyBaseID:FBgn0083950 Length:1087 Species:Drosophila melanogaster
Sequence 2:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster


Alignment Length:1349 Identity:271/1349 - (20%)
Similarity:439/1349 - (32%) Gaps:453/1349 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 CLIMGAITHANSHE-----------HADGFKPDGEILRVLVNSSAQIKC-DVGSSQADDKVLLVV 62
            |.|....|.|:.|:           |.....| |.:.........::.| .:|.|...    ::.
  Fly   105 CRIKAKGTGADVHQEFYNLTVLTAPHPPMVTP-GNLAVATEEKPLELTCSSIGGSPDP----MIT 164

  Fly    63 WYK--NNLPIYSYDTRGAHAGTPSHWRDEE----------------VLEDRAVFRTHKEPAELII 109
            ||:  :.:|:.||..:|   |:.:|:.:..                |:.:||:...|.....:.:
  Fly   165 WYREGSTVPLQSYALKG---GSKNHYTNATLQIVPRRADDGAKYKCVVWNRAMPEGHMLETSVTL 226

  Fly   110 -------------NPVK-EKD------------------------------------------AG 118
                         ||:| |:|                                          ||
  Fly   227 NVNYYPRVEVGPQNPLKVERDHVAKLDCRVDAKPMVSNVRWSRNGQYVSATPTHTIYRVNRHHAG 291

  Fly   119 NFRCRVDFKLSQTRNSNVNLEVVVPPTQPIIFNERRLRIDSRAGPYEEGGSLEVTCVVYGGSPPP 183
            .:.|..|..|.:|...::.|:|:.|   ||:|      |:|:....|||.::.:.|.|.....|.
  Fly   292 KYTCSADNGLGKTGEKDIVLDVLYP---PIVF------IESKTHEAEEGETVLIRCNVTANPSPI 347

  Fly   184 TVIWLMNGQLQNSVVDYTYDGAINSKLVVRNLSRIHQHAVYTCQASN----FHKKYV--ATNITI 242
            .|.||..|     ..|:.|.|    :|:.....|......|.|::.|    |..|.|  ..|.|:
  Fly   348 NVEWLKEG-----APDFRYTG----ELLTLGSVRAEHAGNYICRSVNIMQPFSSKRVEGVGNSTV 403

  Fly   243 DLYL--RPLLVEISFNNQPMSADRKYEIECQAIGSRPPAKITW------WMGNLELH-GHSQKVS 298
            .|.:  ||....|:.|...:.......:.|.|   .||.   |      |..:::.. |::||:.
  Fly   404 ALLVRHRPGQAYITPNKPVVHVGNGVTLTCSA---NPPG---WPVPQYRWFRDMDGDIGNTQKIL 462

  Fly   299 EDG---NVSTSVLSITPTREDHGKALSCRATNELVRNGIRETA-MKLNVF----FIPTLQLDLGS 355
            ..|   ::..:.|.      ..|| ..|.|.|||   ||.:.| :.|.|.    |:..||..:..
  Fly   463 AQGPQYSIPKAHLG------SEGK-YHCHAVNEL---GIGKIATIILEVHQPPQFLAKLQQHMTR 517

  Fly   356 NLNPEDIEEGD-DVYFECKVHANPAAYKVVW-KHNHQIIQHNQR-----------AGVIVSSGDL 407
            .:       || |....|.....|.. ::.| |...:|:...:.           .||:.....|
  Fly   518 RV-------GDVDYAVTCSAKGKPTP-QIRWIKDGTEILPTRKMFDIRTTPTDAGGGVVAVQSIL 574

  Fly   408 ALQGVTR--------HQAGNYTCTASNVEGDGDSNVVELKVMYKPICRPDQKKI-YGVARNEAAE 463
            ..:|..|        :..|.|||...|.....:|: :.|::.::||......|: |.:  .|:||
  Fly   575 RFRGKARPNGNQLLPNDRGLYTCLYENDVNSANSS-MHLRIEHEPIVIHQYNKVAYDL--RESAE 636

  Fly   464 IVCEVDAFPPPENFKWSFNNTAETFDMPQSG-------FRPHSAQGSTLTYTPVKEMDFGTIMCW 521
            :||.|.|:|.|| |:|.:.|......|...|       ...:....|.|....::..|:|..:|.
  Fly   637 VVCRVQAYPKPE-FQWQYGNNPSPLTMSSDGHYEISTRMENNDVYTSILRIAHLQHSDYGEYICR 700

  Fly   522 ADNNVGQQKEPCVFHLIAAGKPEAPTNCTVVNQTSDSLEVYCIEGFDGG-MRQWFLM-------- 577
            |.|.:...:.|  ..|...|.||.|||..::....:...:....||:|| |...:|:        
  Fly   701 AVNPLDSIRAP--IRLQPKGSPEKPTNLKILEVGHNYAVLNWTPGFNGGFMSTKYLVSYRRVATP 763

  Fly   578 --EIFDQHSG-------QLQANIS-----------AKFAALSVTGLDAGRLFRIYVYAVNGRGRS 622
              :.....||       |:.::.|           .|.....:..||..:.:...|||:|.:|.|
  Fly   764 REQTLSDCSGNGYIPSYQISSSSSNSNHEWIEFNCFKENPCKLAPLDQHQSYMFKVYALNSKGTS 828

  Fly   623 DAIALDGYTLKAAEKQTVALTSYKGSAQSPDNFELTPILSIGI-----FVGILVAIVCIG-IGTI 681
                  ||:     .:.:|.|...         ::.|.|.:..     .:||.||..|:. |..:
  Fly   829 ------GYS-----NEILATTKVS---------KIPPPLHVSYDPNSHVLGINVAATCLSLIAVV 873

  Fly   682 AALKLRSHKHQQQQKFVHPNAKFSRPGNLQIKDKISLPLSHSEEMYDEKNPDVVPYNEVDGEYKQ 746
            .:|..|.                :.....:|.:.::|..|.||..:.|.   ::.:......|  
  Fly   874 ESLVTRD----------------ATVPMWEIVETLTLLPSGSETTFKEA---IINHVSRPAHY-- 917

  Fly   747 KSATQTPSG---------HLSTTSEVEISCKPGSTSGTGIV-------QANSADSGTYQSSKDDE 795
              .|.|.||         ||.....:.::    .|:|.|.|       ::|....|.|.:     
  Fly   918 --TTATTSGRSLGVGGGSHLGEDRTMALA----ETAGPGPVVRVKLCLRSNHEHCGAYAN----- 971

  Fly   796 LHYAELSLTNMPSGSS---------------------------------GASKKGQPMGG----- 822
               ||:..:.||..||                                 .|.|:...:||     
  Fly   972 ---AEIGKSYMPHKSSMTTSALVAIIIASLSFVVFLGLLYAFCHCRRKHAAKKESSSVGGGVGGG 1033

  Fly   823 ----------VGVVQH-----------VVQQQQQQQQGQVQHPHQLLGGTLP-----HGSSMRKL 861
                      .|..::           :.|..||.||.....|.....|||.     :|:...:|
  Fly  1034 NANATANPGSTGAKEYDLDLDASRRPSLSQDPQQSQQQPPPPPPYYPTGTLDSKDIGNGNGGMEL 1098

  Fly   862 L------PTIPATATLQRHKPNAG-----------------------GMQHPHQHAPPPTYDYDY 897
            .      |........|:|..|.|                       |.||||.:.      |.|
  Fly  1099 TLTALHDPDEQLNMQQQQHHSNHGQYQQPKAILGIYGGVAGSGGNNSGGQHPHSNG------YGY 1157

  Fly   898 FEEPTIYAQIDAYKTMQVDTGVVVAGVGAGAGSGVNGAGASISSPGSHGTPSTVSPGTVQMYTLP 962
            .....|....|:|:.:...........|.|:|.| :|.||..|.| ...||.|.:          
  Fly  1158 HVTSAIGVDSDSYQVLPSVANSAAGSHGHGSGHG-HGLGAGESGP-LEATPPTCN---------- 1210

  Fly   963 QHPGGYHTLPHNHHAQQQMAGGPQNSASMMQMMQQQQQQQQQMHHHPASNMPPSYQQHQQQQQQQ 1027
                              ::|| .:|.|.:..||||...:..:.:.|......|...:.......
  Fly  1211 ------------------ISGG-SSSNSGINPMQQQHSARANLTNQPTIATASSTNNYNNHLNNT 1256

  Fly  1028 QMAHGQMLVSSNSSGLAST------------------TAAVASPSSSLS 1058
            .:||     ::|::...:|                  |||.|:.:::|:
  Fly  1257 NIAH-----TTNNTNNCTTLKRGHLGNRERERERCQVTAATAATTTALA 1300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-VINP_001036705.1 IG_like 35..140 CDD:214653 27/179 (15%)
Ig_3 157..230 CDD:290638 19/72 (26%)
IG_like 165..242 CDD:214653 22/82 (27%)
Ig 265..343 CDD:299845 22/88 (25%)
IG_like 267..343 CDD:214653 22/86 (26%)
IG_like 363..440 CDD:214653 20/97 (21%)
IGc2 364..429 CDD:197706 18/85 (21%)
IG_like 456..532 CDD:214653 22/82 (27%)
Ig_3 456..524 CDD:290638 21/74 (28%)
fn3 545..622 CDD:278470 21/105 (20%)
fredNP_608812.3 Ig 29..126 CDD:299845 5/20 (25%)
IG_like 141..228 CDD:214653 15/93 (16%)
Ig 147..228 CDD:299845 15/87 (17%)
I-set 232..313 CDD:254352 12/80 (15%)
IGc2 250..302 CDD:197706 4/51 (8%)
IG_like 323..385 CDD:214653 18/70 (26%)
IGc2 330..385 CDD:197706 16/63 (25%)
Ig_2 416..501 CDD:290606 24/100 (24%)
IG_like 418..501 CDD:214653 23/98 (23%)
I-set 505..612 CDD:254352 22/115 (19%)
Ig 526..611 CDD:143165 16/86 (19%)
IG_like 633..715 CDD:214653 23/84 (27%)
Ig 635..713 CDD:143165 22/80 (28%)
FN3 720..838 CDD:238020 27/128 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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