DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-VI and Ptgfrn

DIOPT Version :10

Sequence 1:NP_001036705.1 Gene:side-VI / 4379854 FlyBaseID:FBgn0083950 Length:1087 Species:Drosophila melanogaster
Sequence 2:NP_062116.2 Gene:Ptgfrn / 29602 RGDID:3437 Length:879 Species:Rattus norvegicus


Alignment Length:879 Identity:158/879 - (17%)
Similarity:260/879 - (29%) Gaps:332/879 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PILICLIMGAITHANSHEHADGFKPDGEILRVLVNSSAQIKCDVG-----SSQADDKVLLVVWYK 65
            |:|:.|:..|:.......     .|.|.::|| |.:...|.|:|.     |.|..|         
  Rat     8 PLLLALLSLAVCRGRVVR-----VPAGTLVRV-VGTELVIPCNVSDYDGPSEQNFD--------- 57

  Fly    66 NNLPIYSYDTRGA---------HAGTPS-HWRDEEVLEDRAVFRTHKEPAELIINPVKEKDAGNF 120
                 :|:.:.|:         ..|.|: .:|:.....|..:.||..:..||.|..|:..|.|::
  Rat    58 -----WSFSSSGSSFVELASTWEVGFPAQQYRERLQRGDILLRRTANDAVELHIKNVQPSDQGHY 117

  Fly   121 RC---RVDFKLSQTRNSNVNLEV-----VVPPTQPIIFNERRLRIDSRAGP---YEEGGSLEVTC 174
            :|   ..|..:.......|.::|     ||.|:             ||..|   ..||...|:.|
  Rat   118 KCSTPSTDATVQGNYEDTVQVKVLADALVVGPS-------------SRPPPGLSLREGEPFELRC 169

  Fly   175 VVYGGSPPPTVI---W-LMNGQLQNSVVDYTYDGAINSKLVVRNLSRIHQHAVYTCQASNFHKKY 235
            :....||..|.:   | |..|.:..|::..:::|            |.|       ....:.::|
  Rat   170 IASTTSPLHTHLALRWELHRGPVHRSILALSHEG------------RFH-------PGPGYEQRY 215

  Fly   236 VATNITI-----DLYLRPLLVEISFNNQPMSADRKYEIECQAIGSRPPAKITWWMGNLELHGHSQ 295
            .:.::.:     |.|...:.       :.:|||:         ||.......|    :...|..|
  Rat   216 HSGDVRLDTVGSDAYRLSVA-------RALSADQ---------GSYRCVVSEW----ITEQGSWQ 260

  Fly   296 KVSEDGNVSTSVLSITPTREDHGKALSCRATNELVRNGIRETAMKLNVFFIPTLQLDLGSNLNPE 360
            ::.|.. |..:.:.|.||      ||              :.|:...|.......|||..|:..:
  Rat   261 EIQEKA-VEVATVVIQPT------AL--------------QLAVPRTVSVTEGKDLDLSCNITTD 304

  Fly   361 DIEEGDDV------YF-------------------ECKVHANPAAYKVVWKHNHQIIQHNQRAGV 400
            .:   |||      ||                   :..||::|          |..:.|     |
  Rat   305 RV---DDVRPEVTWYFKKTPDTSLLASHMLARLDRDSLVHSSP----------HVALSH-----V 351

  Fly   401 IVSSGDLALQGVTRHQAGNYTCTASNVEGDGDSNVVELKVMYKPICRPDQKKIYGVARNEAAEIV 465
            ...|..|.::.|::..:|.|                                            :
  Rat   352 DTRSYHLLVRDVSKENSGYY--------------------------------------------L 372

  Fly   466 CEVDAFPPPENFKWSFNNTAETFDMPQSGFRPHSAQGSTLTYTPVKEMDFGTIMCWADNNVGQQK 530
            |.|..:.|..|..|  :..||....|.                       |..:.|.        
  Rat   373 CLVALWAPGHNRSW--HKVAEAMSAPS-----------------------GVSVTWL-------- 404

  Fly   531 EPCVFHLIAAGKPEAPTNCTVVNQTSDSLEVYCIEGFDGGMRQWFLMEIFDQHSGQLQANISAKF 595
            ||.....:.|.|        |...:.|..|:.|                                
  Rat   405 EPEYQVYLNASK--------VPGFSDDPTELQC-------------------------------- 429

  Fly   596 AALSVTGLDAG-RLFRIYVYAVNGRGRSDAIA------LDG-YTLKAAE--KQTVALTSYKGSAQ 650
            ..:....:||| ||...:.|.:| |...|.:|      :|| :||:..|  ||......:..|.:
  Rat   430 RVIDTKRVDAGVRLTVSWYYRMN-RRNDDVVASELLAVMDGDWTLRYGERSKQRAQDGEFIFSKE 493

  Fly   651 SPDNF----ELTPILSIGIFVGILVAIVCIGIGTIAALKLRSHKHQQQQKFVHPNAKFSRPGN-- 709
            ..|.|    :.|.....|.:       .|:         :.:...|:...:|.....||:|.|  
  Rat   494 HTDTFSFRIQRTTEEDRGSY-------YCV---------VSAWTRQRNSSWVKSKDVFSKPVNIF 542

  Fly   710 -------LQIKDKISLPLSHSEEMYDEKNPDVVPYNEVDGEYKQKSATQTPSGHLSTTSEVEISC 767
                   |.:|.:...|...:...: |....|...|.....|......:.|.|.||:.:|.:...
  Rat   543 WASEDSVLVVKARQPKPFFAAGNTF-EMTCKVSSKNIKSPRYSVLITAEKPVGDLSSPNETKYII 606

  Fly   768 KPGSTSGTGI---VQANSADSGTYQSSKDDELHY 798
            .....|...:   ..|:..|....:..::||..|
  Rat   607 SLDQDSVVKLENWTDASRVDGVVLEKVQEDEFRY 640

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-VINP_001036705.1 IG_like 35..140 CDD:214653 26/122 (21%)
Ig_3 165..230 CDD:464046 14/68 (21%)
Ig 262..343 CDD:472250 15/80 (19%)
Ig strand B 266..270 CDD:409416 0/3 (0%)
Ig strand C 280..284 CDD:409416 0/3 (0%)
Ig strand F 320..325 CDD:409416 2/4 (50%)
Ig strand G 336..339 CDD:409416 0/2 (0%)
Ig_3 358..426 CDD:464046 16/92 (17%)
Ig_3 456..524 CDD:464046 10/67 (15%)
FN3 545..622 CDD:473895 12/77 (16%)
PtgfrnNP_062116.2 IGv 39..121 CDD:214650 21/95 (22%)
Cell attachment site. /evidence=ECO:0000255 89..91 0/1 (0%)
Ig strand E 102..106 CDD:409378 2/3 (67%)
Ig <104..140 CDD:472250 8/35 (23%)
Ig strand F 116..121 CDD:409512 1/4 (25%)
Ig strand G 134..137 CDD:409512 0/2 (0%)
Ig 153..254 CDD:472250 24/139 (17%)
Ig strand B 165..169 CDD:409355 1/3 (33%)
Ig strand C 182..186 CDD:409355 0/3 (0%)
Ig strand E 230..234 CDD:409355 1/3 (33%)
Ig strand F 244..249 CDD:409355 1/4 (25%)
Ig 283..373 CDD:472250 21/151 (14%)
Ig 423..520 CDD:472250 26/145 (18%)
Endoplasmic reticulum retention signal 424..427 0/2 (0%)
Ig strand B 425..429 CDD:409355 1/3 (33%)
Ig strand C 439..448 CDD:409355 4/8 (50%)
Ig strand E 498..502 CDD:409355 1/3 (33%)
Ig strand F 512..517 CDD:409355 1/20 (5%)
Cell attachment site. /evidence=ECO:0000255 703..705
Blue background indicates that the domain is not in the aligned region.

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