DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-VI and nphs1

DIOPT Version :10

Sequence 1:NP_001036705.1 Gene:side-VI / 4379854 FlyBaseID:FBgn0083950 Length:1087 Species:Drosophila melanogaster
Sequence 2:XP_031761552.1 Gene:nphs1 / 100494620 XenbaseID:XB-GENE-487811 Length:1236 Species:Xenopus tropicalis


Alignment Length:819 Identity:178/819 - (21%)
Similarity:293/819 - (35%) Gaps:214/819 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 AELIINPVKEKDAGNFRCRV-DFKLSQTRNSNVNLEVVVPPTQPIIFNERRLRIDSRAGP----Y 164
            :.|.:..::|:......|.. :..:..|::::|.|.|..||....|          .|.|    :
 Frog   390 SNLTMEALREEHGMALTCEAFNEAILYTKSNSVTLSVQYPPQNVWI----------EAPPADKFF 444

  Fly   165 EEGGSLEVTCVVYGGSPPPTVIWL-----MNGQLQNSVVDYTYDGAINS-KLVVRNLSRI----H 219
            ..|.|:::||...||:|||.:.|:     ::|..|           |:| |:|.:.::.|    .
 Frog   445 RAGTSVKMTCFSSGGNPPPRLTWIKDTKSLSGGSQ-----------IHSGKIVTKEITIITVPSD 498

  Fly   220 QHAVYTCQASNFHKKYVATNITIDLYLRPLLVEISFNNQPMSADRKYE------IECQAIGSRPP 278
            ..|.|.|.|||..|   ...:|....|:.....|..|  .:|:.::|.      :.|....|.|.
 Frog   499 NMATYRCNASNIGK---TPALTASTKLKVQFPAIDVN--IISSAKEYRRGSTIILTCVTGSSNPA 558

  Fly   279 AKITWWMGNLELHGH--SQKVSEDGNVSTSV-LSITPTREDHGKALSCRATNELVRNGIRETAMK 340
            :.|:|.....:|...  .:|.|..|.:|:|. :::....:|:|:.:||.|.:.::...: .|..|
 Frog   559 STISWVKDGEQLKAQDLGRKPSLYGGISSSSRVTLKAASKDNGRRVSCEAFSSVLNEAV-NTFYK 622

  Fly   341 LNVFFIPTLQLDLGSNLNPEDIEEGDDVYFECKVHANPAAYKVVWK-HNHQIIQHNQRAGVIVSS 404
            ||:.|.|....|..:.:  :.:|.| ......:|.|||......|. ...::|:.......:...
 Frog   623 LNILFPPEFLDDQPAVV--QAVEHG-AALIPVRVRANPPQINYTWSLWGEKLIRDGAYRHHLRGE 684

  Fly   405 GDLALQGVTRHQAGNYTCTASNVEGDGDSNVVELKVMYKP------------------ICRPD-- 449
            |.|.:..|:|..:|.|..|..|.||. :|.|:.|.|.|.|                  .|..|  
 Frog   685 GALEIWNVSRADSGVYNVTCVNKEGK-NSIVIRLDVQYSPTIRSLGDTEVDLGSDAEIACTADAN 748

  Fly   450 ----------------------QKKIYGV---------ARNEAAEIVCEVDAFPPPE-------- 475
                                  ::|:.||         .|.:|....|.||...||.        
 Frog   749 PATDSMFQWRWLGDEERDLSALERKVDGVIGRLVIREAKRTDAGRYECTVDNGIPPSIKADARLI 813

  Fly   476 --------------------------------------NFKWSFNNTAETFDMP---QSGFRPHS 499
                                                  .|.|:.|..:.....|   :..|...|
 Frog   814 VRFKPDIHKGVHLSKVAVPGDGKSVAALVCKAEGIPSVAFSWAKNGVSLDLKDPRYSEKTFHELS 878

  Fly   500 AQGSTLTYTPVKEM-DFGTIMCWADNNVGQQKEPCVFHLIAAGKPEAPTNCTVVNQTSDSLEVYC 563
            ...|||..:.|..: |:....|.|.|.:|  .:.....|::..:|:.|:...|:..|.:|:.:..
 Frog   879 VHTSTLVISNVSAVKDYALFTCTATNTLG--VDSFTIQLVSTSRPDPPSGLRVIGFTHNSVTLQW 941

  Fly   564 IEGFDGGMRQWFLMEI----FDQHSGQLQANI-SAKFAALSVTGLDAGRLFRIYVYAVNGRGRSD 623
            ..|||||..|.|.:..    .|.|   :..:: ..:....::|||.....:...|.|:|..|.||
 Frog   942 SAGFDGGAEQKFRVRYRWPGTDSH---MYVDVFPPQETVFTITGLKGSTAYNFSVNAINALGESD 1003

  Fly   624 AIALDGYTLKAAEKQTVAL---TSYKGSAQSPDNFELTPILSIGIFVGILVAIVCIGIGTIAALK 685
             .|..|..:....|:|..|   |.....|.:.:..|..|         .::|.||.|    .||.
 Frog  1004 -YADQGAVVSVTTKETTLLPVPTQQPTRAPTAEALEWPP---------YILAAVCAG----GALL 1054

  Fly   686 LRSHKHQQQQKFVHPNAKFSRPGNLQIKDKISLPLSHSEEMYDEKNPDVVPYNEV-DGEYKQKSA 749
            |.|:     ..|:....|.||       ||     |...|...:........||. |||.     
 Frog  1055 LVSN-----AAFIGCLVKRSR-------DK-----SQGGEGVKKDESQQRALNEYGDGEL----- 1097

  Fly   750 TQTPSGHLSTTSEVEISCKPGSTSGTGIVQANSADSGTY 788
                   ::|.::..:....||.:|:.:.|.::::||.|
 Frog  1098 -------INTHAKKTLLIDSGSETGSSLYQDSASESGIY 1129

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-VINP_001036705.1 IG_like 35..140 CDD:214653 6/35 (17%)
Ig_3 165..230 CDD:464046 21/74 (28%)
Ig 262..343 CDD:472250 20/89 (22%)
Ig strand B 266..270 CDD:409416 1/9 (11%)
Ig strand C 280..284 CDD:409416 1/3 (33%)
Ig strand F 320..325 CDD:409416 2/4 (50%)
Ig strand G 336..339 CDD:409416 1/2 (50%)
Ig_3 358..426 CDD:464046 15/68 (22%)
Ig_3 456..524 CDD:464046 21/126 (17%)
FN3 545..622 CDD:473895 20/81 (25%)
nphs1XP_031761552.1 Ig 25..105 CDD:472250
Ig strand B 41..45 CDD:409353
Ig strand C 53..57 CDD:409353
Ig strand F 100..106 CDD:409353
Ig strand G 116..119 CDD:409353
Ig 138..228 CDD:472250
Ig strand B 149..153 CDD:409353
Ig strand C 163..167 CDD:409353
Ig strand E 192..196 CDD:409353
Ig strand F 206..211 CDD:409353
Ig strand G 221..224 CDD:409353
Ig 229..326 CDD:472250
Ig strand B 251..255 CDD:409353
Ig strand C 265..269 CDD:409353
Ig strand E 290..294 CDD:409353
Ig strand F 304..310 CDD:409353
Ig strand G 319..322 CDD:409353
Ig 332..413 CDD:472250 3/22 (14%)
Ig strand B 347..351 CDD:409353
Ig strand C 361..365 CDD:409353
Ig strand E 390..394 CDD:409353 1/3 (33%)
Ig strand F 404..409 CDD:409353 1/4 (25%)
Ig_3 429..509 CDD:464046 26/100 (26%)
Ig 541..618 CDD:472250 16/77 (21%)
Ig strand B 546..550 CDD:409353 0/3 (0%)
Ig strand C 560..564 CDD:409353 1/3 (33%)
Ig strand E 589..593 CDD:409353 0/3 (0%)
Ig strand F 603..612 CDD:409353 3/8 (38%)
Ig <652..719 CDD:472250 19/67 (28%)
Ig strand C 659..665 CDD:409353 0/5 (0%)
Ig strand E 686..689 CDD:409353 1/2 (50%)
Ig strand F 699..704 CDD:409353 1/4 (25%)
Ig strand G 712..715 CDD:409353 1/2 (50%)
Ig_3 723..800 CDD:464046 10/76 (13%)
Ig 814..922 CDD:472250 16/109 (15%)
Ig strand B 839..843 CDD:143250 0/3 (0%)
Ig strand C 852..856 CDD:143250 1/3 (33%)
Ig strand E 882..886 CDD:143250 3/3 (100%)
FN3 <895..1180 CDD:442628 66/283 (23%)
Ig strand F 897..902 CDD:143250 1/4 (25%)
Ig strand G 919..922 CDD:143250 0/2 (0%)
FN3 921..1015 CDD:238020 25/97 (26%)
Blue background indicates that the domain is not in the aligned region.

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