DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-VI and icam3

DIOPT Version :9

Sequence 1:NP_001036705.1 Gene:side-VI / 4379854 FlyBaseID:FBgn0083950 Length:1087 Species:Drosophila melanogaster
Sequence 2:XP_002661307.2 Gene:icam3 / 100334824 ZFINID:ZDB-GENE-060503-219 Length:551 Species:Danio rerio


Alignment Length:365 Identity:73/365 - (20%)
Similarity:131/365 - (35%) Gaps:75/365 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 GSLEVTCVVYGGSPPPTVIWLMNGQLQNSVVDYTYDG-----------AINSKLVVRNLSRIHQH 221
            |:||....:   ||...|:...:....|.....|:||           ...:.|:...:|::...
Zfish    30 GALECPLQI---SPQSVVVRYGDSVSVNCSTSVTHDGMGWESTKGGVPLSKASLITWRVSQLTDW 91

  Fly   222 AVYT--CQASNFHKKYVATNITIDLYLRPLLVEISFNNQPMSADRKYEIECQAIGSRPPAKIT-- 282
            .:..  |..:...::.....:.:.:|..|..|.||..||.|:...:||::|......|...:|  
Zfish    92 EIEPPFCYINYGQQQQCEVALPVTIYKTPDSVSISTANQAMTEGNQYELQCDIHNVAPAQNLTVN 156

  Fly   283 WWMGNLELHGHSQKVSEDGNVSTSV-----LSITPTREDHGKALSCRATNELVRNGIRETAMKLN 342
            |:.|...::    :.:...|..:.|     |.|.|.|.|.|....|.|                 
Zfish   157 WYKGETLVN----QTNFTDNTKSPVNKIIRLPIHPDRADDGAQYRCEA----------------- 200

  Fly   343 VFFIPTLQLDLGS---NLNPEDIEE--GDDVYFECKVHANPAAYKVVWKHNHQII---QHNQRAG 399
                   :|:||.   ..:|::..|  ...|:|:..:|..|:...||..::..::   :.:.:..
Zfish   201 -------ELNLGEEGPQPHPKNTSEPLSITVHFKPTIHKLPSTVSVVRGYSKVVVCKSEGHPKPT 258

  Fly   400 VIVSSGDLALQG----VTRHQAGNYTCTASNVEGDGDSNVVELKVMYKPICRPDQKKIYGVARNE 460
            :..|.|...:.|    :|...|.|.||||:|..|....:|.   |:.:.........|..:....
Zfish   259 ISWSDGTNTVNGENFTITESTAENLTCTATNAVGSSSRSVT---VVIQDFSISAVNYIEPMIEGN 320

  Fly   461 AAEIVCEVDAFPPPENF--KW-------SFNNTAETFDMP 491
            ..|:.|:|...|..::.  .|       :..|...||:.|
Zfish   321 QYELQCDVYNVPAAQSLTVNWYKGETLVTQTNFTNTFESP 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-VINP_001036705.1 IG_like 35..140 CDD:214653
Ig_3 157..230 CDD:290638 13/74 (18%)
IG_like 165..242 CDD:214653 13/86 (15%)
Ig 265..343 CDD:299845 17/84 (20%)
IG_like 267..343 CDD:214653 16/82 (20%)
IG_like 363..440 CDD:214653 20/85 (24%)
IGc2 364..429 CDD:197706 18/73 (25%)
IG_like 456..532 CDD:214653 9/45 (20%)
Ig_3 456..524 CDD:290638 9/45 (20%)
fn3 545..622 CDD:278470
icam3XP_002661307.2 ICAM_N 36..117 CDD:252248 10/83 (12%)
Ig2_ICAM-1_like 120..220 CDD:143232 29/127 (23%)
I-set 228..302 CDD:254352 18/76 (24%)
Ig 228..>261 CDD:299845 4/32 (13%)
Ig 249..302 CDD:299845 14/55 (25%)
Ig 306..>380 CDD:299845 10/55 (18%)
IG_like 409..476 CDD:214653
Ig 422..478 CDD:299845
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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