DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-III and nphs1

DIOPT Version :9

Sequence 1:NP_001036681.1 Gene:side-III / 4379844 FlyBaseID:FBgn0083949 Length:1689 Species:Drosophila melanogaster
Sequence 2:NP_001035777.1 Gene:nphs1 / 692352 ZFINID:ZDB-GENE-051102-1 Length:1242 Species:Danio rerio


Alignment Length:1505 Identity:273/1505 - (18%)
Similarity:454/1505 - (30%) Gaps:567/1505 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 VAVEAVLGRTASLPCDIEPEAKDDRVYMVLWFRES-AGKPLYSFDVRGRPFEKALYWSDTNSFGP 120
            |.|.|  |.||.|.|::...:.     .|.|.::. ..:||.|  :.|.|               
Zfish    36 VTVRA--GATALLKCEVLRASG-----AVQWVKDGLLLRPLRS--LPGYP--------------- 76

  Fly   121 RAYFVTGQQPA---KLSVDNIQLDDEGVYRCRVDFQNS--PTRNHRINLTVIVPPHQILVYDASG 180
             .|.:||.|..   .|.:.::.|:|:|.|.|:|....|  |..:..:.|.|.:|..|......|.
Zfish    77 -RYSMTGDQKKGQYHLQILDVTLEDDGPYECQVGRSESSRPIVSRTVWLNVQIPSSQPYFQLESE 140

  Fly   181 RDVAGAVGPLLEGDNIVLTCEVRGGRPEPTVT-WMNGTRTLEAGSGVSMGRHVTVNRLEVAQISR 244
            .       |.:||:...:||.....:|...:| :.:|...||:.|....|             |:
Zfish   141 E-------PWVEGEQYTVTCIAPDAKPPAEITIFRDGEELLESESYTMSG-------------SQ 185

  Fly   245 SALNNTYRCQASNTKLVAPVERSIRIEMLLKPTSVNLTNKLKVFASNTQYNLTCIVAGSVPDTEI 309
            ..|.||:                                                          
Zfish   186 DKLQNTH---------------------------------------------------------- 192

  Fly   310 KWTQNNRPFKRGLLSTSQSNGRVISTLTFYPQPEDDGTMLKCEGSNPRLQNSAIEDSLMMNVIYP 374
                                    :.:|...:..||...|.|...|| ....|:|..:.|.|.:|
Zfish   193 ------------------------AEVTIRARSSDDTRRLTCRAKNP-ASPRALETGMTMKVYFP 232

  Fly   375 PQVTLSLGSTLRPDDIKEGDDVYFECHIKSNPKEHRIMWSHDGQPVTQNVSWGI-IISTRS---L 435
            ||..:.:|  |..:::|.|..:...|..........:.|:.:|:.:  :.||.: .:|.|:   |
Zfish   233 PQAPMIMG--LENEEVKAGSFLKVVCMSYGGNPLATLHWTKNGEVL--STSWDVDFVSRRASSVL 293

  Fly   436 VLQRVGRIHSGFYACSAANDRGETQSAPVNLRIRYAPVCSSSSITVIGA--SLE-EDVPIPCRVN 497
            .::.....:.....|.:.|   :...:|::|..........:.:|::|:  ::| |::.:.|..:
Zfish   294 KMEVKPEDNHAVLQCQSIN---QVTRSPMSLTRTLTVPFEPAEVTLLGSFEAVEGEEINLSCSTS 355

  Fly   498 SDPPEIDFEWTFSTSGEHFEVPSGHYATIQDPTMTTTSDVRRTVVESNETHFESYVETVSELIYT 562
            |..|.:...|...                       ..::.||.|...|.. ...:.|||.|.:.
Zfish   356 SSNPPVHIRWWLG-----------------------FKELNRTEVTFAEGD-NGGMMTVSNLTHK 396

  Fly   563 PKGERDYGTLACYGRNAIGKQSDPCVFQVVPAAKPGALRNCTLRPYVVTSASLNSSNQTTMHANQ 627
            ...|.:..:|.|...|...:.|.....:::....|..:......|.|.            :|:..
Zfish   397 VSREDNGLSLQCEAFNKGTRFSSVRAAELIVYYPPQKVWLDAPPPNVF------------LHSGS 449

  Fly   628 ILPTQYGRHESNYPHMEYVRERHNSSGGNNNGTAPAAGRNNVANKNMRGRTSAGQAKSNNKQLTQ 692
            .|                 |....|||||..|.......|.|.       .:|.:..|:.:.:::
Zfish   450 TL-----------------RLVCFSSGGNPTGQLTWLKNNKVV-------LTASKQVSSERGVSR 490

  Fly   693 QQLQRLKKRTSFTPSQTLAA--IERQRQRKQLSQQQQQLQQQHHQATATKSGGDNKPDGSPAKSS 755
            :.|..|.      ||..||.  .:...:.|::...|.:.:...                 ||.|.
Zfish   491 ELLLTLH------PSDNLATYRCDSSNKAKKVLSAQTKFRVLF-----------------PAVSV 532

  Fly   756 KQRMRRASRDPQIQQQQQHQQQQQHQLHAATSITSSQRKQAESNLSTSHLG----KGSSSSSRSR 816
            |          .:.:|::.::.|...|..   :..|....|  |:|.| ||    ||...:.:..
Zfish   533 K----------IVAKQKELRRGQTLDLDC---LAGSSNPTA--NISWS-LGPVILKGVDQAPKRA 581

  Fly   817 RSSSSNINSKSNNGKQPAKYFNKRQKNMHKQKHQQKLKQLKGTTNEHNSNIIHHYAALSSSLRRR 881
            .....:..||.:...:|                                   ||:         |
Zfish   582 EFGGMSRTSKLSLTLEP-----------------------------------HHW---------R 602

  Fly   882 KRL---AANDILATVAAASTSASLSSPPASSA-------------ASLAATATA-AVEI------ 923
            ||:   |.:::|:.......|..:..||..||             |:|.|..:| ..||      
Zfish   603 KRITCQAFSNVLSEGVNNFYSLDVLFPPEFSAEQPDEVQVIEDETATLPAKVSANPDEITCEWIF 667

  Fly   924 -------EQD---------VSAVDAPAADSG------SNNKRSRKSLTILDKQKQQQEQQQLLPP 966
                   |:|         :..|:....|.|      ||.:.|.::...||.|         ..|
Zfish   668 QGEKLVKERDPRYTFSDWTLEIVNVSRRDGGDYIIECSNAEGSNRTKLRLDVQ---------YSP 723

  Fly   967 NAPQISNQPVAAISGNNVKETAATSAHGAVAAGVKDKAPSSKEDSTDNDNDSDGDEDDDDDDDDG 1031
            .. ::.:.||..    |:.:||                                        |..
Zfish   724 TV-RMKSDPVFV----NIGDTA----------------------------------------DLL 743

  Fly  1032 AEIDAETETND-------EEEDEDEGGEAHDDDADLDEDVAQLATDADYLADGPGDLQEYETVEE 1089
            ...||...|:.       .|.:.||.||..:|                   ||.|.|..||...:
Zfish   744 CVADANPITSSMFSWKWMGEGERDELGEESED-------------------DGTGVLTIYEVTRD 789

  Fly  1090 VDGQAKHVHMLSLEEQLDLESLEDNVEEEDDGEVDDMYNVSDDDFVASVALSTSDTTA--ATPLQ 1152
            ..|                                 :|..:.|:.::...........  |..||
Zfish   790 RAG---------------------------------VYQCTADNGISPTGSVEGQLIVRFAPDLQ 821

  Fly  1153 RTTEGPHIREKATQSQTQTDSATEWQ---LPHFDYSRMEYSF--------------SNGVVTQSL 1200
            :   ||..|:.|::.....|:....|   :|...:...:..|              |.|.:..|:
Zfish   822 K---GPQWRKVASRGDGSNDANVVCQAQGVPRVQFRWAKNGFPLDLGNPRYEETTESTGTIHTSI 883

  Fly  1201 LGGGAVTGA---------GHDGFAGGGTINFDNYDNIIYST------------------MELECM 1238
            |....|:.|         .|:      ::..|:.|..:.||                  :.||.|
Zfish   884 LTVINVSAALDYAIFTCTAHN------SMGEDSLDIQLLSTNHPDPPSDLKLLRVDQTSVTLEWM 942

  Fly  1239 PGYDGGLQQQFFLEAYDSKTMKLRLNMSSTYMDVPVFR-----IDLSDLMPMDYYPDAHPALHLV 1298
            ||:||||.|.|        .::.:...|::||.|.||.     ..::.|.|...|       :..
Zfish   943 PGFDGGLTQIF--------RVRYQWAGSASYMYVDVFPPTATVYTVTGLNPSTMY-------NFS 992

  Fly  1299 VYSVNQKGRSEPIVLEN---VPINEAD-KRSDGRMGLSILPLAALLAGTLFTVGIAVLSVVVIAV 1359
            |.::|..|.|.  ..:|   :.:..|| |.:||  |:|.....:.|||.    |:.|..||::.|
Zfish   993 VNALNSIGESS--YADNNKILTVTTADAKEADG--GVSTADQDSALAGG----GLPVYVVVILVV 1049

  Fly  1360 -------------------RRRRGQGARNMCDDKDKHLGMDVTVTAPLETGAGHQRLVVA---YT 1402
                               |||..:|..:....:.|  ..:...||...|....:.|:.|   .|
Zfish  1050 GGVLFLLNPFICFLLARWKRRRSLKGNTSSISQETK--SEEQRSTASSSTRYASRELINASAQRT 1112

  Fly  1403 LKQGIEKQPD 1412
            |......:||
Zfish  1113 LLVDSSSEPD 1122

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-IIINP_001036681.1 IG_like 59..166 CDD:214653 28/112 (25%)
V-set 59..166 CDD:284989 28/112 (25%)
ig 190..268 CDD:278476 15/78 (19%)
IG_like 192..259 CDD:214653 15/67 (22%)
Ig 296..361 CDD:299845 7/64 (11%)
IG_like 391..468 CDD:214653 14/80 (18%)
IGc2 392..454 CDD:197706 10/65 (15%)
nphs1NP_001035777.1 IG_like 33..126 CDD:214653 29/114 (25%)
Ig 133..216 CDD:386229 24/185 (13%)
Ig 261..313 CDD:386229 9/56 (16%)
Ig 333..419 CDD:386229 20/109 (18%)
ig 439..511 CDD:365836 21/113 (19%)
IG_like 637..719 CDD:214653 15/81 (19%)
Ig_3 723..800 CDD:372822 24/173 (14%)
Ig_hNephrin_like 814..922 CDD:143250 22/116 (19%)
FN3 921..1012 CDD:238020 25/107 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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