DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment side-III and hbs

DIOPT Version :9

Sequence 1:NP_001036681.1 Gene:side-III / 4379844 FlyBaseID:FBgn0083949 Length:1689 Species:Drosophila melanogaster
Sequence 2:NP_001286439.1 Gene:hbs / 44129 FlyBaseID:FBgn0029082 Length:1235 Species:Drosophila melanogaster


Alignment Length:1018 Identity:193/1018 - (18%)
Similarity:349/1018 - (34%) Gaps:301/1018 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 STMPLTTSYNANIRRSCLALFALFLFAAHISLTSGQIDWDDDDDPVSTVAVEAVLGRTASLPCDI 73
            :|.||....|..:           |:|......||              |.:|.:|.:..|.|..
  Fly   330 ATTPLRAELNLTV-----------LYAPKDVYLSG--------------ANQAKVGDSVQLSCVT 369

  Fly    74 EPEAKDDRVYMVLWFRESAGKPLYSFDVRGRPFEKALYWSDTNSFGPRAYFVTGQQPAKLSVDNI 138
            .|.....|:               |:.:.|||.:.:.|.:.::|.|           ..:|..||
  Fly   370 APSNPQARI---------------SWSINGRPLDNSTYKTTSSSDG-----------GWVSSSNI 408

  Fly   139 QLDDEGVYR-----C---RVDFQNSPTRNHRINLTVIVPPHQILVYDASGRDVAGAVGPLLEGDN 195
            .|..:...|     |   ..:...:...:|.:|  |:.||...|:...:..|:      |:.|..
  Fly   409 SLTIDSQSRTFIAVCHALNTELTQNVVGSHTVN--VLYPPSPPLLTGYNDGDI------LISGSI 465

  Fly   196 IVLTCEVRGGRPEPTVTWMNGTRTLEAGSGVSMGRHVTVNRLEVAQISRSALNNT-YRCQASNTK 259
            :.|.|...||.|.||:.|....:.:.|.|.:...:..:    |::.:..::.||. |:|:..|..
  Fly   466 LKLQCSSAGGNPPPTLQWYKNDKIINAPSKLVDSKITS----ELSLLVNASDNNAIYKCKVQNAA 526

  Fly   260 LVAPVERSIRIEMLLKPTSVNLTNKLKVFASNTQYNLTCIVAGSVPDTEIKWTQNNRPFKRGLLS 324
            :..|:..:..:.:...|.:|.::...|......:..|.|..:.|.|..:|.|.::..|.: ||..
  Fly   527 IDIPLFATKTLGVHFPPETVKISVVPKNLVPGIRAKLICDSSSSNPPAKISWWKDGIPVE-GLNL 590

  Fly   325 TSQSN--GRVISTLTFYPQ-PED-DGTMLKCEGSNPRLQNSAIEDSLMMNVIYP-----PQVTLS 380
            .::..  |..:|||..|.. .:| ||.:..|:..|..||.| :.:::.::::||     ||.|..
  Fly   591 ANRPGLWGGSVSTLEMYVNITQDLDGIVYTCQSHNEVLQRS-VHETISLDILYPPKFETPQSTTF 654

  Fly   381 LGSTLRPDDIKEGDDVYFECHIKSNPKEHRIMWSHDGQPVTQNVSWG--IIISTRSLVLQRVGRI 443
            :|        .||...:.|.....||......|:.||.|::.|...|  :|.....|.:.|:.|.
  Fly   655 VG--------VEGAPFHVELLASGNPMVITYTWTKDGLPISSNSLSGQRLISDGPRLNISRLSRN 711

  Fly   444 HSGFYACSAANDRGETQSAPVNLRIRYAPVCSSSSITVI--GASLEEDVP--IPCRVNSDPPE-I 503
            .:|.|.|.|.|.:| |....:.:.:.|||     :||.:  |.|.....|  :.|.:.:.|.| .
  Fly   712 DAGVYICEALNSQG-TALLEIQVAVEYAP-----TITAVSEGRSFVAGEPAVLACHIQARPLEAA 770

  Fly   504 DFEWTFSTSGEHFEVPSGHYATIQDPT-MTTTSDVRR------TVVESNETHFES------YVET 555
            ...|    |.:.:::.:...::.::.| :...:.|.|      |.:..|:....:      .|:|
  Fly   771 HVRW----SRDGYDLATRTISSFENGTALLQIASVERSDIGNFTCIVDNQRGAPAAQNVLLVVQT 831

  Fly   556 VSELIYTP------------------------------------KGER----------------- 567
            ..|:.::|                                    |.:|                 
  Fly   832 APEIDHSPGFTRYAARLGVRAQLICRSLASPQPSFIWRRHGKDLKMQRRNKFKSVERQVDALNFE 896

  Fly   568 -----------DYGTLACYGRNAIGKQSDPCVFQVVPAAKPGALRNCTLRPYVVTSASLNSSNQT 621
                       |||...|..||::|:.|....|     :||.       ||.......:.:.:.|
  Fly   897 SALLIENTSPDDYGQYECVVRNSLGQASTTLEF-----SKPS-------RPDAPLQLRVGNVSDT 949

  Fly   622 TMHAN-------------QILPTQYGRHESNYPHMEYVRERH---------------------NS 652
            .:..|             ::...|:|  |..|.::: .:..|                     |.
  Fly   950 GVDLNWTPGFDGGMQTYFRLRLKQHG--EDKYKYVD-AKPGHQNISLDGLKPGATYYFSVMAANE 1011

  Fly   653 SGGN----------NNGTAPAAG----RNNVANKNMRGRTSAGQA--------------KSNNKQ 689
            :||:          :.|:.|.:.    ::.:.|..:.|.|||...              :..||.
  Fly  1012 AGGSKFMPDIKLTLSKGSQPHSAEYTEKDELPNVMIIGITSAAMVLLVLNAALVAWFVIRRQNKS 1076

  Fly   690 LTQQQLQR----LKKRTSFTPSQTLAAIERQRQRKQLSQQQQQLQQQHHQATATKSGGDNKPDGS 750
            .::.:...    .|..:.......:.|::...|:|..:...........|:||           .
  Fly  1077 QSEAEPSNDDVYSKDDSQSVYKLPITALQADVQKKAAASTYLVENVDIIQSTA-----------Y 1130

  Fly   751 PAKSSKQRM------------RRASRDPQIQQQQQHQQQQQHQLHAATSITSSQRKQAESN--LS 801
            |.|..:..|            .|...:|     ::|.|:     ::||.:....:.:::.:  |.
  Fly  1131 PPKYQESSMCTPPYPLCNPDFTRTLPNP-----KRHSQR-----NSATGMIEGMQMRSKDDHMLI 1185

  Fly   802 TSHLGKGSSSSSRSRRSSSSNINSKSNNGKQPAKYFNKRQKNM 844
            ::.|...|.|.:.|.....|.|:|.|........|||...|.|
  Fly  1186 SNGLYIPSPSPASSLVIKGSYISSPSPAPPADGSYFNMSDKYM 1228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-IIINP_001036681.1 IG_like 59..166 CDD:214653 21/114 (18%)
V-set 59..166 CDD:284989 21/114 (18%)
ig 190..268 CDD:278476 19/78 (24%)
IG_like 192..259 CDD:214653 17/67 (25%)
Ig 296..361 CDD:299845 21/68 (31%)
IG_like 391..468 CDD:214653 22/78 (28%)
IGc2 392..454 CDD:197706 19/63 (30%)
hbsNP_001286439.1 Ig 44..122 CDD:299845
IG_like 45..137 CDD:214653
Ig 153..231 CDD:299845
IG_like 258..342 CDD:214653 4/11 (36%)
Ig 266..327 CDD:299845
IG_like 357..>414 CDD:214653 17/82 (21%)
Ig 360..427 CDD:299845 18/92 (20%)
Ig <468..526 CDD:299845 16/61 (26%)
I-set 547..633 CDD:254352 23/87 (26%)
Ig 556..631 CDD:299845 21/75 (28%)
I-set 644..735 CDD:254352 26/99 (26%)
IGc2 668..725 CDD:197706 17/56 (30%)
IG_like 751..829 CDD:214653 11/81 (14%)
IGc2 753..815 CDD:197706 10/65 (15%)
Ig 852..928 CDD:143165 10/75 (13%)
FN3 935..1017 CDD:238020 11/84 (13%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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