DRSC/TRiP Functional Genomics Resources

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Protein Alignment side-III and sns

DIOPT Version :9

Sequence 1:NP_001036681.1 Gene:side-III / 4379844 FlyBaseID:FBgn0083949 Length:1689 Species:Drosophila melanogaster
Sequence 2:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster


Alignment Length:1269 Identity:239/1269 - (18%)
Similarity:401/1269 - (31%) Gaps:456/1269 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 EAVLGRTASLPCDIEPEAKDDRVYMVLWFRESAGKPLYSFDVRGRPFEKALY---------WSDT 115
            ||.:|....|.|...|......   :.|.            |.||....|..         |:.|
  Fly   390 EARVGDIVPLTCTTAPSNPPAE---IKWM------------VGGRQVRNATSKTIVSPEGGWTTT 439

  Fly   116 NSFGPRAYFVTG-QQPAKLSVD------NIQLDDEGVYRCRVDFQNSPTRNHRINLTVIVPPHQI 173
            ::       :|. .:|.|.|:.      |:||.:..|            ..|.||  |:.||...
  Fly   440 SN-------ITAVVEPNKRSLVVICHGLNMQLTENVV------------STHTIN--VLYPPAPP 483

  Fly   174 LVYD-ASGRDV-AGAVGPLLEGDNIVLTCEVRGGRPEPTVTWMNGTRTLEA---GSGVSMGRHVT 233
            |:.. ..|:.: ||:|..||        |...||.|..|:||....:.:.:   .:..|:...:|
  Fly   484 LISGYMEGQIIPAGSVQKLL--------CVSSGGNPLATLTWYKNDKRINSVIRAADKSVSAEIT 540

  Fly   234 VNRLEVAQISRSALNNTYRCQASNTKLVAPVERSIRIEMLLKPTSVNLTNKLKVFASNTQYNLTC 298
            :    :|.:|.:...  |||:|||:....|:.:|..:.:...|.:|.:..:.:......:..:.|
  Fly   541 I----LANVSDNQAQ--YRCEASNSATEIPLFQSTTLSVHFAPETVKIRIEPEELRPGMEATIIC 599

  Fly   299 IVAGSVPDTEIKWTQNNRPFKRGLLSTSQSN--GRVISTLTFYPQ--PEDDGTMLKCEGSNPRLQ 359
            ..:.|.|..::.|.::..|.: |:.:||:..  |..:|||.|...  .|.:|.:..|:.:|..||
  Fly   600 DSSSSNPPAKLSWWKDGIPIE-GINNTSKPGLWGGTVSTLEFRVNVTQEMNGQVYTCQSANEALQ 663

  Fly   360 NSAIEDSLMMNVIY-----PPQVTLSLGSTLRPDDIKEGDDVYFECHIKSNPKEHRIMWSHDGQP 419
            .|| .:::.::|:|     ||..:.::|        .||:.:......::||......|:.||..
  Fly   664 RSA-HEAVSLDVLYRPKFVPPPSSTAVG--------VEGESLQVSLQTRANPTPVTYKWTKDGTT 719

  Fly   420 VTQNVSWGIIISTRSLVLQRVGRIHSGFYACSAANDRGETQSAPVNLR--IRYAPVCSSSSITVI 482
            :.|:....|.....||...|:.|..:|.|:|||:|.:|   .|.:|:.  :.|.....|.|..::
  Fly   720 IPQDGDHRIFADGGSLNFTRLHRDDAGIYSCSASNSQG---GATLNITVVVEYGTTIKSVSENIV 781

  Fly   483 GASLEEDVPIPCRVNSDP-PEIDFEW-------------TFSTSGEHFEVPS------GHYATIQ 527
             .:..||..:.|.|...| .|...:|             ||:....:..:..      |::..:.
  Fly   782 -VNPGEDAMLSCTVEGKPLTEEHVKWERVGYDMTVKTSTTFANGTSYLHIKDAKREDVGNFRCVA 845

  Fly   528 D------------------------PTMTTTSD------------------------------VR 538
            |                        ||:...:.                              :.
  Fly   846 DNRVDNPTNRDILLIVKFAPEIAKTPTLLRAASGTGERGRLPCRAQGSPKPQFIWRQDKKDLPIN 910

  Fly   539 RTV---VESNETHFESYVETVSELIYTPKGERDYGTLACYGRNAIGKQSDPCVFQVVPAAKP--- 597
            ||.   ||..:....:|..|   ||.......|||...|..||.:|:..:....::.....|   
  Fly   911 RTYKYEVEERKIDSLTYEST---LIVDKVAPADYGAYECVARNELGEAVETVRLEITSQPDPPLS 972

  Fly   598 -----------------------------------------------------GALRNCTLRPYV 609
                                                                 |.||..||..:.
  Fly   973 LNILNVTHDTVTLAWTPGFDGGLKASYRVRYRMADREQYKYIDGLPNSHKLTIGGLRMNTLYLFS 1037

  Fly   610 VTS----------------------------ASLNSSNQTT------------------------ 622
            |.|                            :||.....||                        
  Fly  1038 VMSWNELGQSSYLPDLARAETKEAPPPSHPASSLGGGPPTTSQTPLGGTSGMLLVGVGAGIVVVL 1102

  Fly   623 ---------MHAN---------QILPTQYGRHESNYPHMEYVRERHNSSGGNNNGTAPAAGRNNV 669
                     :|..         :::|.:.....||.|::..:            |.:.||....:
  Fly  1103 LNVFVIGCCLHKRNEKRLKRGLELMPAELTEDSSNTPNLVII------------GISLAAFGFLL 1155

  Fly   670 ANKNMRGRTSAGQAKSNNKQLTQQQLQRLKKRT--SFTPS--------QTLAAIERQRQ--RKQL 722
            .|.::.......|.:   |::.:...|..|..|  .:.||        :||:::..:.:  ..:.
  Fly  1156 VNASLVAWFFVHQRR---KKVAETTNQPAKTATIEMYAPSSYNDTVTGETLSSVSEKSESYSNEG 1217

  Fly   723 SQQQQQLQQQHHQATAT--KSGGDNKP-----DGSPAKSSKQRMRRASRDPQIQQQQQHQQQQQH 780
            |.|.:.:.:...:|.:|  ..|.|..|     ||:........:..|...|             |
  Fly  1218 SSQPEYIDEVRKKAASTYLVEGSDMPPPRYQKDGTLPVIYPNNVVNACTLP-------------H 1269

  Fly   781 QLH----AATSITSSQRKQAESNLSTSHLGKG----SSSSSRSRRSSSSNINSKSNNGKQPAKY- 836
            ..|    ||..:|...:..         :.||    |.|.:.....|..|:||.......|.:| 
  Fly  1270 PRHNNGSAAIHMTRDDQML---------ISKGVYIPSPSPAPPPDGSYYNMNSDRYLSYPPMEYP 1325

  Fly   837 ----FNKRQKNMHKQKHQQKLKQ-------------------------------LKGTTNEHNSN 866
                |..:...|   .|.|.:..                               |:|.......:
  Fly  1326 AALDFTAQPMPM---AHLQPMTVTSLATNGGPTLIGNGSVAAVAGGSGTLRRGILRGVVGVPQPD 1387

  Fly   867 IIHHYAALSSS-LRRRKRLAANDILATVAAASTSASLSSPPASSAASLAATATAAVEIEQDVSAV 930
            :.||.:.:..| ::....|...::.|:....||:.:.|.|          ||||.:         
  Fly  1388 VTHHTSTVGGSPMQMLHDLHPVNLSASTLTTSTTLNGSLP----------TATATL--------- 1433

  Fly   931 DAPAADSG-----SNNKRSRKSLTILDKQKQQQEQQQLL---------PPNAP----QISNQPVA 977
              |....|     :.||:.::......:|:|.|.|||||         |.:||    ||.|.|.|
  Fly  1434 --PRQPHGILKDPNRNKQQQQQQQQQQQQQQLQHQQQLLNASLVGVGVPVSAPLGSLQILNLPPA 1496

  Fly   978 AIS-GNNV--------KETAATSAHGAV--AAGV 1000
            :.. |||:        ..|...|:.|||  |.|:
  Fly  1497 SGGLGNNLLMTTNAFDPTTVGLSSFGAVSQAGGI 1530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-IIINP_001036681.1 IG_like 59..166 CDD:214653 24/121 (20%)
V-set 59..166 CDD:284989 24/121 (20%)
ig 190..268 CDD:278476 20/80 (25%)
IG_like 192..259 CDD:214653 17/69 (25%)
Ig 296..361 CDD:299845 19/68 (28%)
IG_like 391..468 CDD:214653 22/78 (28%)
IGc2 392..454 CDD:197706 18/61 (30%)
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653
Ig 300..361 CDD:299845
Ig 380..454 CDD:299845 17/85 (20%)
IG_like 490..573 CDD:214653 25/96 (26%)
Ig 501..560 CDD:299845 19/72 (26%)
Ig 584..666 CDD:299845 19/82 (23%)
IG_like 585..666 CDD:214653 19/81 (23%)
I-set 678..767 CDD:254352 25/99 (25%)
IGc2 692..757 CDD:197706 19/64 (30%)
Ig 788..849 CDD:143165 9/60 (15%)
Ig 885..960 CDD:143165 15/77 (19%)
FN3 967..1051 CDD:238020 8/83 (10%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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