DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment side-III and fred

DIOPT Version :9

Sequence 1:NP_001036681.1 Gene:side-III / 4379844 FlyBaseID:FBgn0083949 Length:1689 Species:Drosophila melanogaster
Sequence 2:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster


Alignment Length:1778 Identity:328/1778 - (18%)
Similarity:507/1778 - (28%) Gaps:686/1778 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 LFAAHISLTSGQIDWDDDDDPVSTVAVEAVLGRTASLPCDIEP--EAKDDRVYMVLW-------- 87
            |....:.|:.|.|..||..|  :...|:.|      |.|....  ::.|...|...|        
  Fly     7 LIIGQLWLSIGLISGDDSLD--TREGVDLV------LKCRFTEHYDSTDFTFYWARWTCCPTLFE 63

  Fly    88 ----------------FRESAGKPLYSFDVRGRPFEKALYWSDTNSFGPRAYFVTGQQPAKLSVD 136
                            ||.|.|  :|...::...:.:                            
  Fly    64 NVAIGDVQLNSNYRLDFRPSRG--IYDLQIKNTSYNR---------------------------- 98

  Fly   137 NIQLDDEGVYRCRVDFQNSPTRNHR--INLTVIVPPHQILVYDASGRDVAGAVGPLLEGDNIVLT 199
                 |.|.:.||:..:.:....|:  .||||:..||..:|       ..|.:....|...:.||
  Fly    99 -----DNGRFECRIKAKGTGADVHQEFYNLTVLTAPHPPMV-------TPGNLAVATEEKPLELT 151

  Fly   200 CEVRGGRPEPTVTWMNGTRTLEAGSGVSMGRHVTVNRLEVAQISRSALNNTYRCQASNTKLVAPV 264
            |...||.|:|.:||      ...||.|                                      
  Fly   152 CSSIGGSPDPMITW------YREGSTV-------------------------------------- 172

  Fly   265 ERSIRIEMLLKPTSVNLTNKLKVFASNTQYNLTCIVAGSVPDTEIKWTQNNRPFKRGLLSTSQSN 329
                                                                |.:...|.....|
  Fly   173 ----------------------------------------------------PLQSYALKGGSKN 185

  Fly   330 GRVISTLTFYPQPEDDGTMLKCEGSNPRL-QNSAIEDSLMMNVIYPPQVTLSLGSTLRPDDIKEG 393
            ....:||...|:..|||...||...|..: :...:|.|:.:||.|.|:|.:...:.|:    .|.
  Fly   186 HYTNATLQIVPRRADDGAKYKCVVWNRAMPEGHMLETSVTLNVNYYPRVEVGPQNPLK----VER 246

  Fly   394 DDV-YFECHIKSNPKEHRIMWSHDGQPVTQNVSWGIIISTRSLVLQRVGRIHSGFYACSAANDRG 457
            |.| ..:|.:.:.|....:.||.:||.|:         :|.:..:.||.|.|:|.|.|||.|..|
  Fly   247 DHVAKLDCRVDAKPMVSNVRWSRNGQYVS---------ATPTHTIYRVNRHHAGKYTCSADNGLG 302

  Fly   458 ETQSAPVNLRIRYAPVCSSSSITVIGASLEEDVPIPCRVNSDPPEIDFEW------TFSTSGEHF 516
            :|....:.|.:.|.|:....|.| ..|...|.|.|.|.|.::|..|:.||      .|..:||  
  Fly   303 KTGEKDIVLDVLYPPIVFIESKT-HEAEEGETVLIRCNVTANPSPINVEWLKEGAPDFRYTGE-- 364

  Fly   517 EVPSGHYATIQDPTMTTTSDVRRTVVESNETHFESYVETVSELIYTPKGERDYGTLACYGRNAIG 581
                          :.|...||       ..|..:|:.....::.....:|..|.    |.:.:.
  Fly   365 --------------LLTLGSVR-------AEHAGNYICRSVNIMQPFSSKRVEGV----GNSTVA 404

  Fly   582 KQSDPCVFQVVPAAKPGALRNCTLRPYVVTSASLNSSNQTTMHANQILPTQYGRHESNYPHMEY- 645
                     ::...:||       :.|:       :.|:..:|....:......:...:|..:| 
  Fly   405 ---------LLVRHRPG-------QAYI-------TPNKPVVHVGNGVTLTCSANPPGWPVPQYR 446

  Fly   646 -VRERHNSSGGNNNGTA-------PAAGRNNVANKNMRGRTSAGQAKSNNKQLTQQQLQRLKKRT 702
             .|:.....|......|       |.|...:....:.......|..|.....|...|        
  Fly   447 WFRDMDGDIGNTQKILAQGPQYSIPKAHLGSEGKYHCHAVNELGIGKIATIILEVHQ-------- 503

  Fly   703 SFTPSQTLAAIERQRQRKQLSQQQQQLQQQHHQATATKSGGDNKPDGSPAKSSKQRMRRASRDPQ 767
               |.|.||.:::...|:        :....:..|.:..|   ||                 .||
  Fly   504 ---PPQFLAKLQQHMTRR--------VGDVDYAVTCSAKG---KP-----------------TPQ 537

  Fly   768 IQQQQQHQQQQQHQLHAATSITSSQRKQAESNLSTSHLGKG---SSSSSRSRRSSSSNINS--KS 827
            |:           .:...|.|..: ||..:...:.:..|.|   ..|..|.|..:..|.|.  .:
  Fly   538 IR-----------WIKDGTEILPT-RKMFDIRTTPTDAGGGVVAVQSILRFRGKARPNGNQLLPN 590

  Fly   828 NNGKQPAKY---FNKRQKNMHKQKHQQKLKQLKGTTNEHNSNIIHHYAALSSSLRRRKRLAANDI 889
            :.|.....|   .|....:||.:             .||...:||.|..::..||.         
  Fly   591 DRGLYTCLYENDVNSANSSMHLR-------------IEHEPIVIHQYNKVAYDLRE--------- 633

  Fly   890 LATVAAASTSASLSSPPASSAASLAATATAAVEIEQDVSAVDAPAADSGSNNKRSRKSLTILDKQ 954
                                          :.|:...|.|...|                     
  Fly   634 ------------------------------SAEVVCRVQAYPKP--------------------- 647

  Fly   955 KQQQEQQQLLPPNAPQISNQPVAAISGNNVKETAATSAHGAVAAGVKDKAPSSKEDSTDNDNDSD 1019
               :.|.|.                 |||                     ||....|:|..    
  Fly   648 ---EFQWQY-----------------GNN---------------------PSPLTMSSDGH---- 667

  Fly  1020 GDEDDDDDDDDGAEIDAETETNDEEEDEDEGGEAHDDDADLDEDVAQLATDADYLADGPGDLQEY 1084
                        .||....|.||.......  .||...:|..|.:.:.....|.:. .|..||..
  Fly   668 ------------YEISTRMENNDVYTSILR--IAHLQHSDYGEYICRAVNPLDSIR-APIRLQPK 717

  Fly  1085 ETVEEVDGQAKHVHMLSLEEQLDLESLEDNVEEEDDGEVDDMYNV------SDDDFVASVALSTS 1143
            .               |.|:..:|:.|          ||...|.|      .:..|:::..| .|
  Fly   718 G---------------SPEKPTNLKIL----------EVGHNYAVLNWTPGFNGGFMSTKYL-VS 756

  Fly  1144 DTTAATPLQRTTEGPHIREKATQSQTQTDSATEWQLPHFDYSRMEYSFSNGVVTQSLLGGGAVTG 1208
            ....|||               :.||.:|.:....:|.:..|.   |.||               
  Fly   757 YRRVATP---------------REQTLSDCSGNGYIPSYQISS---SSSN--------------- 788

  Fly  1209 AGHDGFAGGGTINFDNYDNIIYSTMELECM---PGYDGGLQQQFFLEAYDSKTMKLRLNMSSTYM 1270
            :.|:                   .:|..|.   |.....|.|.   ::|..|...|....:|.|.
  Fly   789 SNHE-------------------WIEFNCFKENPCKLAPLDQH---QSYMFKVYALNSKGTSGYS 831

  Fly  1271 DVPVFRIDLSDLMP---MDYYPDAHP----------ALHLVVYSVNQKGRSEPI--VLENVPINE 1320
            :..:....:|.:.|   :.|.|::|.          :|..||.|:..:..:.|:  ::|.     
  Fly   832 NEILATTKVSKIPPPLHVSYDPNSHVLGINVAATCLSLIAVVESLVTRDATVPMWEIVET----- 891

  Fly  1321 ADKRSDGRMGLSILPLAALLAGTLFTVGIAVLSVV------VIAVRRRRGQGARNMCDDKDKHLG 1379
                      |::||     :|:..|...|:::.|      ..|....|..|...     ..|||
  Fly   892 ----------LTLLP-----SGSETTFKEAIINHVSRPAHYTTATTSGRSLGVGG-----GSHLG 936

  Fly  1380 MDVTVTAPLETGAG------------HQRLVVAYTLKQGIEKQPDILSAQKSAPTGGDASSPLGN 1432
            .|.|:......|.|            |:........:.|....|.    :.|..|....:..:.:
  Fly   937 EDRTMALAETAGPGPVVRVKLCLRSNHEHCGAYANAEIGKSYMPH----KSSMTTSALVAIIIAS 997

  Fly  1433 RPSGLFAG------------------GGGGGGGGGGAAGLASAAPMTGNTGGHKTTDYDGNA--- 1476
            ....:|.|                  ...|||.|||.|. |:|.|  |:||. |..|.|.:|   
  Fly   998 LSFVVFLGLLYAFCHCRRKHAAKKESSSVGGGVGGGNAN-ATANP--GSTGA-KEYDLDLDASRR 1058

  Fly  1477 PHLNSPPSQSSTLKLESDPAAGGGGL----VGARSGGSNPPL--LYDAMPTLS-----------R 1524
            |.|:..|.||........|....|.|    :|..:||....|  |:|....|:           :
  Fly  1059 PSLSQDPQQSQQQPPPPPPYYPTGTLDSKDIGNGNGGMELTLTALHDPDEQLNMQQQQHHSNHGQ 1123

  Fly  1525 YEQLGLSMASYSAGAGTGGSSSTLSSAGSTVSNAMAANGSAGPGGYAAHLHHTLPHNMAPQRGHD 1589
            |:|....:..|...||:||::|                     ||     .|  ||:        
  Fly  1124 YQQPKAILGIYGGVAGSGGNNS---------------------GG-----QH--PHS-------- 1152

  Fly  1590 PLNLADYLTTSSLIDYGLNKPPAAHMTLPKGMGLGLGM-GLGVGVGAGMGVG-PGPGMGMGMAST 1652
              |...|..||::   |::..  ::..||.......|. |.|.|.|.|:|.| .||.........
  Fly  1153 --NGYGYHVTSAI---GVDSD--SYQVLPSVANSAAGSHGHGSGHGHGLGAGESGPLEATPPTCN 1210

  Fly  1653 MAGTSLSPSQLNTITHKSAAGRN 1675
            ::|.|.|.|.:|.:..:.:|..|
  Fly  1211 ISGGSSSNSGINPMQQQHSARAN 1233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
side-IIINP_001036681.1 IG_like 59..166 CDD:214653 19/134 (14%)
V-set 59..166 CDD:284989 19/134 (14%)
ig 190..268 CDD:278476 13/77 (17%)
IG_like 192..259 CDD:214653 13/66 (20%)
Ig 296..361 CDD:299845 12/65 (18%)
IG_like 391..468 CDD:214653 24/77 (31%)
IGc2 392..454 CDD:197706 20/62 (32%)
fredNP_608812.3 Ig 29..126 CDD:299845 20/137 (15%)
IG_like 141..228 CDD:214653 27/182 (15%)
Ig 147..228 CDD:299845 26/176 (15%)
I-set 232..313 CDD:254352 27/93 (29%)
IGc2 250..302 CDD:197706 18/60 (30%)
IG_like 323..385 CDD:214653 20/85 (24%)
IGc2 330..385 CDD:197706 17/77 (22%)
Ig_2 416..501 CDD:290606 12/91 (13%)
IG_like 418..501 CDD:214653 12/82 (15%)
I-set 505..612 CDD:254352 26/146 (18%)
Ig 526..611 CDD:143165 21/116 (18%)
IG_like 633..715 CDD:214653 24/201 (12%)
Ig 635..713 CDD:143165 24/158 (15%)
FN3 720..838 CDD:238020 32/183 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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