DRSC/TRiP Functional Genomics Resources

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Protein Alignment RunxA and Runx1

DIOPT Version :10

Sequence 1:NP_001259747.1 Gene:RunxA / 4379817 FlyBaseID:FBgn0083981 Length:663 Species:Drosophila melanogaster
Sequence 2:XP_017453542.1 Gene:Runx1 / 50662 RGDID:2283 Length:464 Species:Rattus norvegicus


Alignment Length:473 Identity:172/473 - (36%)
Similarity:220/473 - (46%) Gaps:131/473 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 SNTEQNTPPTPA---QLLNEAY------------TKMTSDILAERTLGDFLTEHPGELIRTSSPL 106
            |.:.:.|||:.|   ..::||.            :|:.|   .:|::.:.|.:|||||:||.||.
  Rat    22 STSRRFTPPSTALSPGKMSEALPLGAPDGGAALASKLRS---GDRSMVEVLADHPGELVRTDSPN 83

  Fly   107 FVCTVLPPHWRSNKTLPVAFKVVSLGDIMDGTMVTVRAGNDENYCAELRNCTAVMKNQVAKFNDL 171
            |:|:|||.|||.|||||:|||||:|||:.|||:|||.|||||||.|||||.||.||||||:||||
  Rat    84 FLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDL 148

  Fly   172 RFVGRSGRGKSFTLTITVSTNPPHIATYNKAIKVTVDGPREPRSKTMLSLLGQQQQFHFAFGQR- 235
            ||||||||||||||||||.||||.:|||::|||:||||||||| :....|..|.:....:|.:| 
  Rat   149 RFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPR-RHRQKLDDQTKPGSLSFSERL 212

  Fly   236 --------------PFHFSTDP--------LSGFRMPPIGNCQSASNTH----WGYGSAASAYSP 274
                          |.|.:..|        .:.|...|....|.|....    |.|..:..    
  Rat   213 SELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDARQIQPSPPWSYDQSYQ---- 273

  Fly   275 YLASSGLSSCTTPTSAQFNNPALGFTCSSNDQSNNQDFGGATNRDCVPMLPDSTASDL----DQH 335
            ||.|  ::|...|.:......|.|.|..|.:.|:..                |||.||    |..
  Rat   274 YLGS--ITSSVHPATPISPGRASGMTSLSAELSSRL----------------STAPDLTAFGDPR 320

  Fly   336 LSSLVGSTSGQMTHHSLLGAGGQTSISSTVNGASGGGSAGAGTAGGGAGSGGGAGGGAGGNSILV 400
            ....:.|.|....|:                       .||.|......||.|.|..|..::   
  Rat   321 QFPTLPSISDPRMHY-----------------------PGAFTYSPPVTSGIGIGMSAMSST--- 359

  Fly   401 PRYHTNASNEYNVHSSQNGPRSLSDSSQAES-PVQEDLLTTNTPN----LGSTAGGGAAN--GGA 458
            .||||..            |.....||||:: |.|     |.:|:    .|::||....:  ||.
  Rat   360 SRYHTYL------------PPPYPGSSQAQAGPFQ-----TGSPSYHLYYGTSAGSYQFSMVGGE 407

  Fly   459 GS---------NAGSGAA 467
            .|         ||.:|||
  Rat   408 RSPPRILPPCTNASTGAA 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RunxANP_001259747.1 Runt 88..216 CDD:459963 98/127 (77%)
Runx1XP_017453542.1 Runt 65..193 CDD:459963 98/128 (77%)
RunxI 374..464 CDD:430037 18/57 (32%)

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