DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RunxA and runx3

DIOPT Version :9

Sequence 1:NP_001259747.1 Gene:RunxA / 4379817 FlyBaseID:FBgn0083981 Length:663 Species:Drosophila melanogaster
Sequence 2:XP_002936643.1 Gene:runx3 / 100485729 XenbaseID:XB-GENE-487784 Length:396 Species:Xenopus tropicalis


Alignment Length:450 Identity:164/450 - (36%)
Similarity:215/450 - (47%) Gaps:115/450 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 GNNN---NSSGNNSNTEQNTPPTPAQLLNEAYTKMTSDILAERTLGDFLTEHPGELIRTSSPLFV 108
            |.||   ||||...        |.|::               ||:.|.|.:|.|||:||.||.|:
 Frog    26 GENNGAINSSGPGR--------TRAEI---------------RTVVDVLADHAGELVRTDSPNFL 67

  Fly   109 CTVLPPHWRSNKTLPVAFKVVSLGDIMDGTMVTVRAGNDENYCAELRNCTAVMKNQVAKFNDLRF 173
            |:|||.|||.|||||||||||:|||:.|||:|||.|||||||.|||||.:||||||||:||||||
 Frog    68 CSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRF 132

  Fly   174 VGRSGRGKSFTLTITVSTNPPHIATYNKAIKVTVDGPREPRSKTMLSLLGQQQQFHFAFGQRPFH 238
            ||||||||||||||||.|:|..:|||::||||||||||||| :....|..|.:.|...|      
 Frog   133 VGRSGRGKSFTLTITVFTSPTQVATYHRAIKVTVDGPREPR-RHRQKLEEQSKPFSDRF------ 190

  Fly   239 FSTDPLSGFRMPPIGNCQSA-SNTHWGYGSAASAYSPYLASSGLSSCTTPTSAQFNNPALGFTCS 302
              :|....||:.|..|.::. :||:   ..::.|.:.....:.|:..|.|  .||..|.      
 Frog   191 --SDLRQTFRVQPNSNPRATLTNTN---PFSSQAQTQIQGPTDLNPFTDP--RQFERPF------ 242

  Fly   303 SNDQSNNQDFGGATNRDCVPMLPDSTASDLDQHLSSLVGSTSGQMTHHSLLGAGG--QTSISSTV 365
                            ..:|.|.:|..||...|..|.:.|........|..|.||  .|.:.:|.
 Frog   243 ----------------SALPSLTESRFSDPRMHYPSAMSSAFSYTASPSTTGIGGISMTGMPTTT 291

  Fly   366 N-----------GASGGGSAGAGTAGGGAGSGGGAGGGAGGNSILVPRYHTNASNEYNVHSSQNG 419
            .           |:|...|.                           .:.||||..:..:.:.:|
 Frog   292 RFHHTYLPPPYPGSSQNQSG---------------------------PFQTNASPYHLYYGTSSG 329

  Fly   420 PRSLSDSSQAESPVQEDLLTTNT---------PNLGSTAGGGAANGGAGSNAGSGAAGSG 470
            ....|..:...||.:  :|::.|         |||.:.:.|..|: |:.||:.:....||
 Frog   330 SYQFSMVAGERSPSR--MLSSCTSVAGNNLINPNLANQSDGVDAD-GSHSNSPTAMTTSG 386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RunxANP_001259747.1 Runt 95..216 CDD:279225 96/120 (80%)
runx3XP_002936643.1 Runt 54..175 CDD:366336 96/121 (79%)
RunxI 306..396 CDD:369907 21/110 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 213 1.000 Domainoid score I2697
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000993
OrthoInspector 1 1.000 - - mtm9362
Panther 1 1.100 - - O PTHR11950
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X738
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
77.010

Return to query results.
Submit another query.