DRSC/TRiP Functional Genomics Resources

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Protein Alignment RunxA and runx2

DIOPT Version :9

Sequence 1:NP_001259747.1 Gene:RunxA / 4379817 FlyBaseID:FBgn0083981 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_001128588.1 Gene:runx2 / 100189546 XenbaseID:XB-GENE-482021 Length:468 Species:Xenopus tropicalis


Alignment Length:464 Identity:159/464 - (34%)
Similarity:204/464 - (43%) Gaps:141/464 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 RTLGDFLTEHPGELIRTSSPLFVCTVLPPHWRSNKTLPVAFKVVSLGDIMDGTMVTVRAGNDENY 150
            ||:.:.:.:||.||:||.||..:|:|||.|||.|||||||||||:||::.||::|||.|||||||
 Frog    74 RTMVEIIADHPAELVRTDSPNLLCSVLPSHWRCNKTLPVAFKVVALGEVSDGSVVTVMAGNDENY 138

  Fly   151 CAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITVSTNPPHIATYNKAIKVTVDGPREPR- 214
            .||.||.:||||||||:||||||||||||||||||||||.||||.:|||::|:||||||||||| 
 Frog   139 SAEPRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAMKVTVDGPREPRR 203

  Fly   215 -------SKTMLSLLGQQQQFHFAFGQRPFHFSTDPLSGFRMP--------------PIGNCQSA 258
                   ||..|            |.:|.......|.....:|              |.|..|.|
 Frog   204 HRQKLDDSKPSL------------FSERDLGRIPHPSMRMGVPPQSPRPSLNSSPFNPQGQSQIA 256

  Fly   259 ------SNTHWGYGSAASAYSPYLASSGLSSCTTPTSAQFNNPALGFTCSSNDQSNNQDFGGATN 317
                  |:..|.|..:..:|...:.|..:.| |||.|                         :|.
 Frog   257 DPRQTQSSPPWSYDQSYPSYLSQMTSPSIHS-TTPLS-------------------------STR 295

  Fly   318 RDCVPMLPD-----STASDL-----DQHLSSLVGSTSGQMTHHSLLGAGGQTSISSTVNGASGGG 372
            ...:|.:.|     |.||:|     .:..:|:...|..:.::..:......|.......|.|.|.
 Frog   296 GTGLPAISDVPRRLSGASELGPFSDPRQFTSISSLTESRFSNPRMHYPATFTYSPPVTTGMSLGM 360

  Fly   373 SAGAGTAGGGAGSGGGAGGGAGGNSILVPRYHTNASNEYNVHSSQNGPRSLSDSSQAESPVQEDL 437
            ||                         ...|||.....| ..||||          ...|.|   
 Frog   361 SA-------------------------TTHYHTYLPPPY-PGSSQN----------QSGPFQ--- 386

  Fly   438 LTTNTPNL--GSTAG--------GG------------AANGGAGSNAGSGAAGSGAGGAGGASSA 480
             |::||.|  |:::|        ||            .:|||...|........|....|..|| 
 Frog   387 -TSSTPYLYYGTSSGSYQFPMVPGGDRSPSRMLPPCTTSNGGTLLNPNLANQNDGVDADGSHSS- 449

  Fly   481 VGNPAMLGA 489
              :|.:|.:
 Frog   450 --SPTVLNS 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RunxANP_001259747.1 Runt 95..216 CDD:279225 93/128 (73%)
runx2NP_001128588.1 Runt 83..204 CDD:279225 93/120 (78%)
RunxI 378..468 CDD:285676 23/96 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 213 1.000 Domainoid score I2697
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000993
OrthoInspector 1 1.000 - - mtm9362
Panther 1 1.100 - - O PTHR11950
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X738
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.010

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