Protein Alignment zfh2 and Lim1

DIOPT Version :9

• Sequence 1: NP_524623.2
• Gene: zfh2 / 43795
• FlyBaseID: FBgn0004607
• Length: 3005
• Species: Drosophila melanogaster
• Sequence 2: NP_572505.1
• Gene: Lim1 / 31813
• FlyBaseID: FBgn0026411
• Length: 505
• Species: Drosophila melanogaster
• Alignment Length: 633
• Identity: 128/633 - (20%)
• Similarity: 193/633 - (30%)
• Gaps: 223/633 - (35%)

  Fly  1503 LIISER--HVYKYRCKQC-----SLAFKTQEKLTTHMLYHSMRDATKCSFCQRNFRSTQALQKHM 1560
            |.:.||  |....||.:|     ...|..:.||.....:. .|..||||.|.:..
  Fly    40 LNVLERAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFF-RRYGTKCSGCGQGI---------- 93

  Fly  1561 EQAHAEDGTPSTRTNSPQTPMLSTEETHKHLLAESHAVEREVSGSDVSPIELETHLNKETRHLSP 1625
                    .||.....|:..:.                                |||..|..:..
  Fly    94 --------APSDLVRKPRDKVF--------------------------------HLNCFTCCICR 118

  Fly  1626 TPMSLDSQSH----QKHLATFAALL-KQQQC--NSDAGGLHPEALSMSTGEMPPQLQGLQNLQHI 1683
            ..:|...|.:    .|.:.....|| |...|  ||.:..|...|......:.||.|:
  Fly   119 KQLSTGEQLYVLDDNKFICKDDYLLGKAPSCGHNSLSDSLMGSASEDDDDDDPPHLR-------- 175

  Fly  1684 QQHFGAVAAAAGLPINPVDMLNIMQFHHLMSLNFMNLAPPLVFGANAAGNAVSGPSALNNSITTS 1748
                   |.|.||.:                     |.|.   |.::||    ||...::....|
  Fly   176 -------ATALGLGV---------------------LGPN---GPDSAG----GPLGTSDISVQS 205

  Fly  1749 TATSASGLGDTHLTSGVSSIPVD-SGKATAVPPQTQLNANANSQQLASNQKR--ARTRITDDQLK 1810
            .:|.:.   :||..|...|:..| .|:..:       .|...|...|:..||  .||.|...||:
  Fly   206 MSTDSK---NTHDDSDQGSLDGDPDGRGDS-------QAENKSPDDANGSKRRGPRTTIKAKQLE 260

  Fly  1811 ILRAHFDINNSPSEESIMEMSQKANLPMKVVKHWFRNTLFKERQRNKDSPYNFNNPPSTTLNLEE 1875
            :|:..|:....|:.....:::::..|||:|::.||:|...|||:..:.:  :...||.
  Fly   261 VLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRSKERRMKQIT--SMGRPPF------- 316

  Fly  1876 YERTGQAKVTPLNDTCSVAVTGPMTSSTISLP---------------------------PSGNIN 1913
            :....:.:..|:|.:......||      ..|                           |.|.:.
  Fly   317 FGGARKMRGFPMNLSPGGLDDGP------GFPYFAADAKFEFGYGGPFHPHDGPYFPGHPGGPMP 375

  Fly  1914 LSSKENATSKVLAAGKANASGPVTFSATVPVSTPLS-RPESTNSSGNISDYIGNNIFFGQLGSKE 1977
            .::               ..||:..|..:|:..... .||:|              |.||.|..
  Fly   376 FNA---------------PGGPMDHSGPIPMVNEFGLTPEAT--------------FLGQAGGP- 410

  Fly  1978 QILPYSLDGQIKSEP------QDDMIGATDFAYQTKQHSSFSFLKQQQDLVDPPEQCLTNQNADT 2036
               |..|...:...|      .:.::.|...|.|.:       ..|||......:|....|||..
  Fly   411 ---PMQLQSAVGPPPPPPPPSAEHLMAAAAAAAQQQ-------AAQQQQQQQQQQQQQQQQNAQQ 465

  Fly  2037 AQDQSLLAGSSLASNCQSQQQINIFETKS-ESGSSDVLSRPPS-PNSG 2082
            |.:|:           |.|||.|...|.| |..||...|.|.: .|.|
  Fly   466 AANQT-----------QQQQQQNGPRTNSPEFMSSANFSEPQNMQNEG 502

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
zfh2	NP_524623.2	C2H2 Zn finger	561..581	CDD:275368
		C2H2 Zn finger	616..633	CDD:275368
		C2H2 Zn finger	1515..1542	CDD:275371	6/31 (19%)
		C2H2 Zn finger	1543..1564	CDD:275371	3/20 (15%)
		HOX	1797..1853	CDD:197696	18/57 (32%)
		Homeobox	2158..2210	CDD:278475
		Homeobox	2764..2816	CDD:278475
Lim1	NP_572505.1	LIM1_Lhx1_Lhx5	27..78	CDD:188753	10/37 (27%)
		LIM2_Lhx1_Lhx5	86..141	CDD:188761	13/104 (13%)
		COG5576	185..324	CDD:227863	39/164 (24%)
		Homeobox	250..303	CDD:278475	16/52 (31%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45444982
Domainoid	1	1.000	48	1.000	Domainoid score	I4481
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	3	2.840