DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hcf and AT5G50310

DIOPT Version :10

Sequence 1:NP_524621.2 Gene:Hcf / 43788 FlyBaseID:FBgn0039904 Length:1500 Species:Drosophila melanogaster
Sequence 2:NP_568723.1 Gene:AT5G50310 / 835096 AraportID:AT5G50310 Length:666 Species:Arabidopsis thaliana


Alignment Length:428 Identity:102/428 - (23%)
Similarity:172/428 - (40%) Gaps:104/428 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 WKRVLNPTGPQPRPRHGHRAINIKELMVVFGG----GNEGIVDELHVY------NTVTNQWYVPV 114
            ||.|.:|..|.  ||..|:|:..|..:.:|||    .|:   :..|.|      :..||||....
plant   113 WKLVSSPNSPP--PRSSHQAVAWKNYLYIFGGEFTSPNQ---ERFHHYKDFWMLDVKTNQWEQLN 172

  Fly   115 LKGDVPNGCAAYGFVVEGTRMFVFGGM---IEYGKYSNELYELQATKWEWRKMYPESPDSGLSPC 176
            ||| .|:..:.:..|:...::.:|||.   :...:|.|:||.....:::|:::.|:  ...:.|.
plant   173 LKG-CPSPRSGHRMVLYKHKIIIFGGFYDTLREVRYYNDLYVFDLDQYKWQEIKPK--PGAMWPT 234

  Fly   177 PRLGHSFTMVGEKIFLFGGLANESDDPKNNIPKYLN-DLYILDTRGVHSHNGKWIVPKTYGDSPP 240
            .|.|..|.:..::|||:||.:.|....|::....:: ||:.||.|     ..:|...|..| .||
plant   235 ARSGFQFFVYQDEIFLYGGYSKEVSSEKSSEKGIVHADLWSLDPR-----TWEWNKVKKIG-MPP 293

  Fly   241 PRESHTGISFATKSNGNLNLLIYGG----------MSGCRLGDLWLLETDSMTW-----SKPKTS 290
              .|..|.|......   ..|::||          |....|.:|:..:.|:..|     .|.|:|
plant   294 --SSRAGFSVCVHKK---RALLFGGVVDMEMEGDVMMSLFLNELYGFQLDNRRWYPIELRKEKSS 353

  Fly   291 GEAPLPRSLHSSTMIGNKMYVFGGWVPLVINDSKSTTEREWKCTNTLAVLD-----------LET 344
            .: ...::|.:..:..|.            :|...:||.:    .:||:::           .|.
plant   354 KD-KAKKTLEAKPVASNN------------DDEMDSTEED----ESLAMIEQTDGVGSSDGISER 401

  Fly   345 MTWENVTLD---------------------TVEENV--PRARAGHCAVGIQSRLYVWSGRDGYRK 386
            |. .|:|:|                     :|.|.|  |..|...|.|..:..||::.   |..:
plant   402 MA-TNLTVDGNRSDKSKALQGAKTRLDPQVSVSEEVVKPCGRINSCMVVGKDTLYIYG---GMME 462

  Fly   387 AWNNQVCCKDLWYLEVSKPLYAVKVALVRASTHALELS 424
            ..:.:|...||:.|.:|| |...|..:....|..:|:|
plant   463 IKDKEVTLDDLYSLNLSK-LDEWKCIIPTTETEWVEVS 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HcfNP_524621.2 PLN02193 <59..363 CDD:177844 85/365 (23%)
KELCH repeat 74..115 CDD:276965 14/50 (28%)
KELCH repeat 123..175 CDD:276965 10/54 (19%)
KELCH repeat 178..239 CDD:276965 18/61 (30%)
KELCH repeat 297..360 CDD:276965 15/96 (16%)
FN3 <1307..>1381 CDD:442628
FN3 <1307..1338 CDD:238020
FN3 1344..1448 CDD:238020
AT5G50310NP_568723.1 NanM 64..313 CDD:442289 59/218 (27%)
KELCH repeat 128..173 CDD:276965 13/47 (28%)
KELCH repeat 180..233 CDD:276965 10/54 (19%)
KELCH repeat 236..286 CDD:276965 16/54 (30%)
KELCH repeat 296..345 CDD:276965 10/51 (20%)
Kelch_4 441..487 CDD:433191 14/49 (29%)
DUF4110 572..>638 CDD:463871
Blue background indicates that the domain is not in the aligned region.

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