DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hcf and NSP5

DIOPT Version :10

Sequence 1:NP_524621.2 Gene:Hcf / 43788 FlyBaseID:FBgn0039904 Length:1500 Species:Drosophila melanogaster
Sequence 2:NP_568692.1 Gene:NSP5 / 834871 AraportID:AT5G48180 Length:326 Species:Arabidopsis thaliana


Alignment Length:332 Identity:78/332 - (23%)
Similarity:131/332 - (39%) Gaps:73/332 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 RWKRVLNPTGPQPRPRHGHRAINIKELMVVFGGGNEGIV---DELHVYNTVTNQWYVPVLKGDVP 120
            :|.:| ...|..|..|..|....:...:..|||..:..:   ::|:|::..|.:|.:....|:.|
plant     7 KWLKV-GQKGAGPGARSSHAMTVVGNKVYCFGGELKPTIHIDNDLYVFDLETQEWSIAPATGEAP 70

  Fly   121 NGCAAYGFVVEGTRMFVFGGMIEYGKYSNELYELQATKWEWRKMYPESPDSGLSPCPRLGHSF-T 184
            ..|.....|..|:.::|:||..:..:| |.|:.......||:.:.|  .:.||.     |.|: :
plant    71 FPCFGVSMVTIGSTIYVYGGRDDKRRY-NGLHSYDTETNEWKLLAP--VEEGLP-----GRSYHS 127

  Fly   185 MVGE--KIFLFGGLANESDDPKNNIPKYLNDLYILDTRGVHSHNGKWIVPKTYGDSPPPRESHTG 247
            |.|:  |:::|||:..:.         .:|.|:..|.     .:.||:.....|:          
plant   128 MAGDDRKVYVFGGVTAKG---------RVNTLHAYDV-----VDQKWVEYPAAGE---------- 168

  Fly   248 ISFATKSNGNLNLLIYG-------GMSGCRLGDLWLLETDSMTWSKPKTSGEAPLPRSLHSSTMI 305
               |.|..|...|::..       |..|..|||:...:..|..|...:|:|:.|..||:..:...
plant   169 ---ACKGRGAPGLVVVEGRIWVLFGFDGNELGDIHCFDLASEQWKAVETTGDVPAARSVFPAVSY 230

  Fly   306 GNKMYVFGGWVPLVINDSKSTTERE---------WKCTNTLAVLDLETMTWENVTLDTVEENVPR 361
            |..:.::||             |.|         .|.:..:..||.||:.||.:.... ||..|.
plant   231 GKYIVIYGG-------------EEEPHELMHMGAGKMSGEVYQLDTETLVWERIVCGN-EEEKPS 281

  Fly   362 ARAGHCA 368
            .| |.||
plant   282 QR-GWCA 287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HcfNP_524621.2 PLN02193 <59..363 CDD:177844 74/325 (23%)
KELCH repeat 74..115 CDD:276965 9/43 (21%)
KELCH repeat 123..175 CDD:276965 14/51 (27%)
KELCH repeat 178..239 CDD:276965 14/63 (22%)
KELCH repeat 297..360 CDD:276965 16/71 (23%)
FN3 <1307..>1381 CDD:442628
FN3 <1307..1338 CDD:238020
FN3 1344..1448 CDD:238020
NSP5NP_568692.1 PLN02193 <3..319 CDD:177844 78/332 (23%)
KELCH repeat 21..69 CDD:276965 10/47 (21%)
KELCH repeat 73..121 CDD:276965 13/50 (26%)
KELCH repeat 123..162 CDD:276965 12/52 (23%)
KELCH repeat 173..219 CDD:276965 11/45 (24%)
KELCH repeat 222..271 CDD:276965 14/61 (23%)
Blue background indicates that the domain is not in the aligned region.

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