DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hcf and AT3G07720

DIOPT Version :10

Sequence 1:NP_524621.2 Gene:Hcf / 43788 FlyBaseID:FBgn0039904 Length:1500 Species:Drosophila melanogaster
Sequence 2:NP_566316.1 Gene:AT3G07720 / 819963 AraportID:AT3G07720 Length:329 Species:Arabidopsis thaliana


Alignment Length:344 Identity:86/344 - (25%)
Similarity:132/344 - (38%) Gaps:66/344 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 RWKRVLNPTGPQPRPRHGHRAINIKELMVVFGGGNEGIV---DELHVYNTVTNQWYVPVLKGDVP 120
            :|.: |...|..|..|..|....:...|..|||..:..|   ::|:|::..|..|.:....||.|
plant     9 KWVQ-LKQKGTGPGARSSHAIALVGNKMYAFGGEFQPRVPVDNQLYVFDLETQTWSIQEASGDAP 72

  Fly   121 NGCAAYGFVVEGTRMFVFGGMIEYGKYSNELYELQATKWEWRKMYPESPDSGLSPCPRLGHSFTM 185
            ...........|..::.|||.....:..||||.......:|:.:  .|.::|  |..|..||.|.
plant    73 PPRVGVAMAAVGPIIYFFGGRDSTHQELNELYCFNTLTNQWKLL--SSGETG--PQNRSYHSITA 133

  Fly   186 VGEKIFLFGGLANESDDPKNNIPKYLNDLY---ILDTRGVHSHNGKWIVPKTYGDSPPPRESHTG 247
            ..:.:::|||.         .:...||||:   ::|.        |||      ..|.|.|    
plant   134 DSQNVYVFGGC---------GVDGRLNDLWAYNVVDQ--------KWI------KFPSPGE---- 171

  Fly   248 ISFATKSNGNLNL--------LIYGGMSGCRLGDLWLLETDSMTWSKPKTSGEAPLPRSLHSSTM 304
               |.:..|...|        ::| |.:|....|:...:.....|.:.:|.||.|..||:.|:.:
plant   172 ---ACRGRGGPGLEVVQGKIWVVY-GFAGEEADDVHCFDIAKGEWKEVETKGEKPSARSVFSTAV 232

  Fly   305 IGNKMYVFGGWVPLVINDSKSTTEREWKC-TNTLAVLDLETMTWENVT--LDTVEENVPRARAGH 366
            :|.::.:.||.:     |..........| |.....||.||:.|....  :.:||...||   |.
plant   233 VGKQILISGGEI-----DPSDLGHMGAGCFTGDAYGLDTETLEWRKWEDGVGSVEHPGPR---GW 289

  Fly   367 CAVGIQSR-----LYVWSG 380
            ||....||     |.|:.|
plant   290 CAFAAGSRDGKQGLLVYGG 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HcfNP_524621.2 PLN02193 <59..363 CDD:177844 78/320 (24%)
KELCH repeat 74..115 CDD:276965 11/43 (26%)
KELCH repeat 123..175 CDD:276965 11/51 (22%)
KELCH repeat 178..239 CDD:276965 15/63 (24%)
KELCH repeat 297..360 CDD:276965 16/65 (25%)
FN3 <1307..>1381 CDD:442628
FN3 <1307..1338 CDD:238020
FN3 1344..1448 CDD:238020
AT3G07720NP_566316.1 PLN02193 <1..322 CDD:177844 86/344 (25%)
KELCH repeat 23..71 CDD:276965 12/47 (26%)
KELCH repeat 75..123 CDD:276965 11/51 (22%)
KELCH repeat 126..168 CDD:276965 15/64 (23%)
KELCH repeat 176..215 CDD:276965 7/39 (18%)
KELCH repeat 225..272 CDD:276965 13/51 (25%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.