DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hcf and LKP2

DIOPT Version :10

Sequence 1:NP_524621.2 Gene:Hcf / 43788 FlyBaseID:FBgn0039904 Length:1500 Species:Drosophila melanogaster
Sequence 2:NP_849983.1 Gene:LKP2 / 816408 AraportID:AT2G18915 Length:611 Species:Arabidopsis thaliana


Alignment Length:373 Identity:99/373 - (26%)
Similarity:150/373 - (40%) Gaps:86/373 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FSSGERISASDLNSEHIIQAENHSFANRI------SMDMD-VPDGHQLDSNLTGFRWKRVLNPTG 68
            ||.|..:..|..|....      :..|||      .::|. :.|...||...:...||.||..:.
plant   284 FSVGGTVEPSRCNFSAC------AVGNRIVIFGGEGVNMQPMNDTFVLDLGSSSPEWKSVLVSSP 342

  Fly    69 PQPRPRHGHRAINIKELMVVFGG-GNEGIVDELHVYNTVTNQWYVPVLKGDVPNGCAAYGF---- 128
            |..|..|....:|...| ||||| |:.|:::::.:.:          |..|.|:.....|.    
plant   343 PPGRWGHTLSCVNGSRL-VVFGGYGSHGLLNDVFLLD----------LDADPPSWREVSGLAPPI 396

  Fly   129 --------VVEGTRMFVFGGMIEYGKYSNE--LYELQATKWEWRKM-YPESPDSGLSPCPRLGHS 182
                    .::||::.|.||..:.|...::  |.:|......||:: .|.:|.|      ||||:
plant   397 PRSWHSSCTLDGTKLIVSGGCADSGALLSDTFLLDLSMDIPAWREIPVPWTPPS------RLGHT 455

  Fly   183 FTMVGE-KIFLFGGLANESDDPKNNIPKY-LNDLYILDTRGVHSHNGKWIVPKTYGDS------- 238
            .|:.|: ||.:|||||      ||...:: .||:|.:|   :......|.....||.|       
plant   456 LTVYGDRKILMFGGLA------KNGTLRFRSNDVYTMD---LSEDEPSWRPVIGYGSSLPGGMAA 511

  Fly   239 PPPRESHTGISFATKSNGNLNLLIYGG-MSGC-RLGDLWLLE--TDSMTWSKPKTSGEAPLPRSL 299
            ||||..|..||..    |. .:||:|| ::|. ....|:||:  .:...|......|..|.....
plant   512 PPPRLDHVAISLP----GG-RILIFGGSVAGLDSASQLYLLDPNEEKPAWRILNVQGGPPRFAWG 571

  Fly   300 HSSTMI-GNKMYVFGGWVPLVINDSKSTTEREWKCTNTLAVLDLETMT 346
            |::.:: |.::.|.||           .|..||.......:| |.|.|
plant   572 HTTCVVGGTRLVVLGG-----------QTGEEWMLNEAHELL-LATST 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HcfNP_524621.2 PLN02193 <59..363 CDD:177844 87/318 (27%)
KELCH repeat 74..115 CDD:276965 10/41 (24%)
KELCH repeat 123..175 CDD:276965 14/66 (21%)
KELCH repeat 178..239 CDD:276965 23/69 (33%)
KELCH repeat 297..360 CDD:276965 12/51 (24%)
FN3 <1307..>1381 CDD:442628
FN3 <1307..1338 CDD:238020
FN3 1344..1448 CDD:238020
LKP2NP_849983.1 PRK13558 <43..>151 CDD:237426
F-box_AtADO-like 197..243 CDD:438925
NanM 294..589 CDD:442289 88/342 (26%)
KELCH repeat 294..342 CDD:276965 12/53 (23%)
KELCH repeat 346..395 CDD:276965 15/59 (25%)
KELCH repeat 398..443 CDD:276965 10/44 (23%)
KELCH repeat 451..498 CDD:276965 20/55 (36%)
KELCH repeat 515..560 CDD:276965 14/49 (29%)
Blue background indicates that the domain is not in the aligned region.

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