DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hcf and lztr1

DIOPT Version :10

Sequence 1:NP_524621.2 Gene:Hcf / 43788 FlyBaseID:FBgn0039904 Length:1500 Species:Drosophila melanogaster
Sequence 2:NP_001074074.2 Gene:lztr1 / 792832 ZFINID:ZDB-GENE-030131-9564 Length:783 Species:Danio rerio


Alignment Length:457 Identity:104/457 - (22%)
Similarity:171/457 - (37%) Gaps:96/457 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 TGFRWKRVLNP----TGPQPRPRHGHRAINIKELMVVFGGGN-EGIVDELHVYNTVTNQWYVPVL 115
            |..||:| |.|    .|.:   |..|..:..::.:.||||.| :.::::|..::.....|.....
Zfish    40 TVHRWRR-LPPCDEFVGAR---RSKHTVVAYRDAIYVFGGDNGKNMLNDLLRFDVKDCSWCRAFT 100

  Fly   116 KGDVPNGCAAYGFVVEGTRMFVFGGMIE--YG----KYSNELYELQATKWEWRKMYPESPDSGLS 174
            .|..|.....:..||.|:.||||||...  |.    |..|:|:|.:....:|.:...|.     .
Zfish   101 TGTPPAPRYHHSAVVYGSSMFVFGGYTGDIYSNSNLKNKNDLFEYKFATGQWTEWKVEG-----R 160

  Fly   175 PCPRLGHSFTMVGEKIFLFGGLANESDDPKNNIPKYLNDLYILDTRGVHS-HNGKWIVPKTYGDS 238
            ...|..|..|:..:|:::|.|....:         .|||::   |.|:.. ....|...:..|:.
Zfish   161 LVARSAHGATVYNDKLWIFAGYDGNA---------RLNDMW---TIGLQDREQAYWEEIEQSGEI 213

  Fly   239 PPPRESHTGISFATKSNGNLNLLIYGGMSGCRL-GDLWLLETDSMTWSKPKTS----GEAPLPRS 298
            ||   |......|...:   .:.::.|.||.:: .:|:..|.....|::..|.    |..|.|:.
Zfish   214 PP---SCCNFPVAVCRD---KMFVFSGQSGAKITNNLFQFEFKGHIWTRIPTEHLLRGSPPPPQR 272

  Fly   299 LHSSTMIG--NKMYVFGGWVPLVINDSKSTTEREWKCTNTLAVLDLETMTWENVTLDTVEENVPR 361
            .:..||:.  ..:|||||       .:.:|...|..|      .|:::.||| |...:::..:|.
Zfish   273 RYGHTMVAFDRHLYVFGG-------AADNTLPNELHC------YDVDSQTWE-VIQPSIDSEMPS 323

  Fly   362 ARAGHCAVGIQSRLYVWSG------RDG------------------YRKAWNNQVCCKDLWYLEV 402
            .|..|.|..|...:|::.|      |.|                  |.|.|.|:..|...:.|..
Zfish   324 GRLFHAAAVIHDAMYIFGGTVDNNVRSGEMYRFQFSCYPKCTLHEDYGKLWENRQFCDVEFILGE 388

  Fly   403 SKPLYAVKVALVRASTHALELSWTATTFAAAYVLQIQKIEQPLNTSSKLLSNNIVQQGTPTSAET 467
            .:......:|:|.|     ...|.......|...|.||.:...|..|.       :.|:.:..:.
Zfish   389 REEKVLGHIAIVTA-----RCKWLRKKILQARDRQKQKSKLECNEESD-------ESGSGSQKDC 441

  Fly   468 SG 469
            ||
Zfish   442 SG 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HcfNP_524621.2 PLN02193 <59..363 CDD:177844 76/322 (24%)
KELCH repeat 74..115 CDD:276965 9/41 (22%)
KELCH repeat 123..175 CDD:276965 16/57 (28%)
KELCH repeat 178..239 CDD:276965 13/61 (21%)
KELCH repeat 297..360 CDD:276965 15/64 (23%)
FN3 <1307..>1381 CDD:442628
FN3 <1307..1338 CDD:238020
FN3 1344..1448 CDD:238020
lztr1NP_001074074.2 NanM 44..357 CDD:442289 83/353 (24%)
KELCH repeat 58..104 CDD:276965 10/45 (22%)
KELCH repeat 108..161 CDD:276965 16/57 (28%)
KELCH repeat 273..315 CDD:276965 15/55 (27%)
BTB1_POZ_LZTR1 357..514 CDD:349617 19/99 (19%)
BACK1_LZTR1 518..576 CDD:350580
BTB2_POZ_LZTR1 590..715 CDD:349618
BACK2_LZTR1 711..771 CDD:350581
Blue background indicates that the domain is not in the aligned region.

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