DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hcf and klhdc4

DIOPT Version :10

Sequence 1:NP_524621.2 Gene:Hcf / 43788 FlyBaseID:FBgn0039904 Length:1500 Species:Drosophila melanogaster
Sequence 2:NP_001119902.2 Gene:klhdc4 / 569887 ZFINID:ZDB-GENE-030131-2057 Length:586 Species:Danio rerio


Alignment Length:447 Identity:92/447 - (20%)
Similarity:151/447 - (33%) Gaps:147/447 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 PDGHQLDS-------NLTGFRWKRVLNPTGPQPRPRHGHRAINIKELMVVFGGGNEGIVD----- 98
            |||.|...       :|....|::|..|..|.  .|.|||.:..|..::||||.:|...|     
Zfish   144 PDGEQFYHYKDLWVLHLGTRTWEQVKAPGAPS--GRSGHRMVLSKRQLLVFGGFHESTRDYIYYN 206

  Fly    99 ELHVYNTVTNQW--YVPVLKGDVPNGCAAYGFVVEGTRMFVFGGM--------IEYGKYSNELYE 153
            ::|.:|..|..|  ..|...|..|..........:|..:.::||.        ::.|...::::.
Zfish   207 DVHAFNLDTFTWSRLQPTGTGPCPRSACQMTPTSDGNGVIIYGGYSKARAKKDVDKGTIHSDMFL 271

  Fly   154 LQ------ATKWEWRKMYPESPDSGLSPCPRLGHSFTM-VGEKIFLFGGLANESDDPKNNIPKYL 211
            |:      ..||.|.::.|    ||:.|.||.|.|..: .|.:..||||:.:|.|: ::....:.
Zfish   272 LRREGKEDQEKWTWTRVNP----SGVKPPPRSGFSLAVGPGGRALLFGGVCDEEDE-ESLEGDFF 331

  Fly   212 NDLYILDTRGVHSHNGKWIVPKTYGDSPPPRESHTGISFATKSNGNLNLLIYGGMSGCRLGDLWL 276
            ||||..|     .:..:|...:..|:....::...|     |....:|                 
Zfish   332 NDLYFYD-----MNKNRWFPAQLKGNKSEKKKRRRG-----KKTEQMN----------------- 369

  Fly   277 LETDS----------------------MTWSK--PKTSGE------------------------- 292
             ||:.                      ||..:  |.|..|                         
Zfish   370 -ETEEEKEEAQGPTEIIKEIVAEDGTVMTIKEVIPATQAEEDSEEEEEEEDEEVEEEAAAAAPSV 433

  Fly   293 APLPRSLHSSTMIGNKMYVFGGWVPL-----VINDSKSTTEREWKCTNTLAVLDLETMTW----- 347
            .|.|||...:|:...|::::||...:     .::|..|....:.:..:.|..:|.:|..|     
Zfish   434 EPCPRSNAMTTVKHGKLFLYGGMFEVGDRQFTLSDLYSLDLHKMEQWDVLVEMDPKTQEWLEESE 498

  Fly   348 ---------------------ENVTLDTVEENV--PRARAGHCAVGIQSRL-YVWSG 380
                                 |..:.|..||:|  |..:.|......|:|. ..|.|
Zfish   499 SEDEKEEGDAKGGDDEEDDEDEEESDDESEEDVDHPPVKPGEALTDYQARTEKYWMG 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HcfNP_524621.2 PLN02193 <59..363 CDD:177844 82/407 (20%)
KELCH repeat 74..115 CDD:276965 16/47 (34%)
KELCH repeat 123..175 CDD:276965 11/65 (17%)
KELCH repeat 178..239 CDD:276965 17/61 (28%)
KELCH repeat 297..360 CDD:276965 17/95 (18%)
FN3 <1307..>1381 CDD:442628
FN3 <1307..1338 CDD:238020
FN3 1344..1448 CDD:238020
klhdc4NP_001119902.2 None
Blue background indicates that the domain is not in the aligned region.

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