DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hcf and klhdc10

DIOPT Version :10

Sequence 1:NP_524621.2 Gene:Hcf / 43788 FlyBaseID:FBgn0039904 Length:1500 Species:Drosophila melanogaster
Sequence 2:NP_001016816.1 Gene:klhdc10 / 549570 XenbaseID:XB-GENE-1014477 Length:411 Species:Xenopus tropicalis


Alignment Length:363 Identity:84/363 - (23%)
Similarity:128/363 - (35%) Gaps:103/363 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 RVLNPTGPQPRPRHGHRAINIKELMVVFGGGNEG-------------IVDELHVYNTVTNQWYVP 113
            |.|......|..|.|||.:.....:.||||.|..             :..||..|:..|..|:..
 Frog    49 RFLREGRRSPPARSGHRCVADNTNLYVFGGYNPDYDESGGPENEDYPLFRELWRYHFATGMWHQM 113

  Fly   114 VLKGDVPNGCAAYGFVVEGTRMFVFGGM-IEYGK------------------------------- 146
            ...|.:|...|:...|:.|..:.||||. |.:|:                               
 Frog   114 GTDGHMPRELASMSLVLHGHNLLVFGGTGIPFGESNGNDVYVCNVKYKRWSKLNCRGKKPNRIYG 178

  Fly   147 --------------------YSNELYELQATKWEWRKMYPESPDSGLSPCPRLGHSFTMVGEKIF 191
                                ||.:|:.|..:..||.::.|.:|...| |..|..|.....|::|:
 Frog   179 QAMAIIHGFLYVFGGTTGYIYSTDLHRLDLSTREWIQLKPNNPPCDL-PEERYRHEIAHDGQRIY 242

  Fly   192 LFGGLANESDDPKNNIPKYLNDLYILDTRGVHSHN---GKW--IVPKTYGD--SPPPRESHTGIS 249
            :.||..:.:             .|.|:.  :|::|   ..|  |..|.||:  .|..|..|:.:.
 Frog   243 VLGGGTSWT-------------AYSLEK--IHAYNFETNTWEDIPTKPYGNLGFPAARRCHSCVQ 292

  Fly   250 FATKSNGNLNLLIYGGMSG-CRLGDLWLLETDSMTWSKPKTSGEAPLPRSLHSSTMI-GNKMYVF 312
            ...:      :.|.||.:| ..|||||.|:..:..|:  |.....|.|...|.:.:. ...||:.
 Frog   293 IKNE------VFICGGYNGLVILGDLWKLDLQTFQWT--KLPALMPEPAYFHCAAVTPAGCMYIH 349

  Fly   313 GGWVPLVINDSKSTTEREWKCTNTLAVLDLETMTWENV 350
            ||.|.:..|....:..:.|     |.|..|..:.|||:
 Frog   350 GGVVNIQQNKRTGSLFKIW-----LVVPSLLELCWENL 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HcfNP_524621.2 PLN02193 <59..363 CDD:177844 84/363 (23%)
KELCH repeat 74..115 CDD:276965 14/53 (26%)
KELCH repeat 123..175 CDD:276965 18/103 (17%)
KELCH repeat 178..239 CDD:276965 15/67 (22%)
KELCH repeat 297..360 CDD:276965 14/55 (25%)
FN3 <1307..>1381 CDD:442628
FN3 <1307..1338 CDD:238020
FN3 1344..1448 CDD:238020
klhdc10NP_001016816.1 NanM 58..354 CDD:442289 73/319 (23%)
KELCH repeat 61..120 CDD:276965 15/58 (26%)
Kelch 1 72..133 14/60 (23%)
KELCH repeat 124..172 CDD:276965 9/47 (19%)
Kelch 2 135..186 6/50 (12%)
KELCH repeat 177..225 CDD:276965 8/47 (17%)
Kelch 3 187..239 12/52 (23%)
KELCH repeat 229..282 CDD:276965 15/67 (22%)
Kelch 4 240..288 14/62 (23%)
KELCH repeat 285..329 CDD:276965 14/51 (27%)
Kelch 5 296..342 15/53 (28%)
Kelch 6 345..388 13/43 (30%)
Blue background indicates that the domain is not in the aligned region.

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