DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hcf and rabepk

DIOPT Version :10

Sequence 1:NP_524621.2 Gene:Hcf / 43788 FlyBaseID:FBgn0039904 Length:1500 Species:Drosophila melanogaster
Sequence 2:NP_001002209.1 Gene:rabepk / 431756 ZFINID:ZDB-GENE-040704-52 Length:351 Species:Danio rerio


Alignment Length:361 Identity:94/361 - (26%)
Similarity:145/361 - (40%) Gaps:85/361 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 VLNPTGPQPRPRHGHRAINI------------KELMVVFGGGN-EGIVDELHVYNTVTNQWYVPV 114
            ||.|||..|....||....:            |..:|:.||.| .|...:.::.|..|:||.:|.
Zfish    20 VLEPTGAAPGVSVGHTCSFLPAAHHHDEDGGGKGKIVIVGGANPSGSFADSYIINLDTHQWDLPD 84

  Fly   115 LKGDVPNGCAAY---GFVVEG--TRMFVFGGMIEYGKYSNELYELQATKW----EWRKMYPESPD 170
            .:|..    |.|   .|..|.  ..::||||    .:.|.....:||.::    |.|:.:.....
Zfish    85 WEGLQ----ARYEHCSFTPESEPQSLWVFGG----AEKSTNRNCVQALRFSDGGEGRRFWQSVQV 141

  Fly   171 SGLSPCPRLGH-SFTMVGEKIFLF-GGLANES--DDPKNNIPKYLNDLYILDTRGVHSHNGKWIV 231
            :|:.|..|..| :...||.::|:| ||.|..|  .|.:         |::.|...|     .|..
Zfish   142 TGVPPSGRTYHTNSACVGNRLFVFSGGEAGSSAVTDAQ---------LHVFDAVSV-----TWTQ 192

  Fly   232 PKTYGDSPPPRESHTGISFATKSNGNLNLLIYGGMSGCRL-GDLWLLETDSMTWSKPKTSGEAPL 295
            |.|.|  .||.:.|..:..|..|    ::.|:|||||.:. .|::.|.|:|:.|.|.|..|:.|.
Zfish   193 PDTTG--TPPAQRHGHVITAVGS----DIYIHGGMSGEKFHSDMFTLNTESLKWQKVKAKGDLPP 251

  Fly   296 PRSLHSSTMIGNKMYVFGGWVPLVINDSKSTTEREWKCTNTLAVLDLETMTWENVTLDTVEENVP 360
            ..:.|||......:::|||          .|.:   ..||::.....:...|   ||...|.::|
Zfish   252 GVAAHSSVTFNKNIFIFGG----------MTAD---GATNSMFKFQCDKQRW---TLLKFEGDLP 300

  Fly   361 RARAGH--CAV------------GIQSRLYVWSGRD 382
            ..|..|  |.:            .:|...:|:.|.|
Zfish   301 PGRLDHSMCLLPWRVKMEDSEHADVQHLCFVFGGMD 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HcfNP_524621.2 PLN02193 <59..363 CDD:177844 87/326 (27%)
KELCH repeat 74..115 CDD:276965 13/53 (25%)
KELCH repeat 123..175 CDD:276965 14/60 (23%)
KELCH repeat 178..239 CDD:276965 18/64 (28%)
KELCH repeat 297..360 CDD:276965 13/62 (21%)
FN3 <1307..>1381 CDD:442628
FN3 <1307..1338 CDD:238020
FN3 1344..1448 CDD:238020
rabepkNP_001002209.1 NanM 39..276 CDD:442289 72/277 (26%)
Kelch 1 54..102 15/51 (29%)
Kelch 2 105..156 13/54 (24%)
KELCH repeat 149..199 CDD:276965 18/65 (28%)
Kelch 3 162..210 17/63 (27%)
KELCH repeat 203..250 CDD:276965 17/50 (34%)
Kelch 4 214..263 18/48 (38%)
KELCH repeat 253..293 CDD:276965 11/55 (20%)
Kelch_3 262..311 CDD:433188 14/64 (22%)
Kelch 5 264..313 14/64 (22%)
Kelch 6 328..351 3/9 (33%)
Blue background indicates that the domain is not in the aligned region.

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