DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hcf and CG6758

DIOPT Version :9

Sequence 1:NP_524621.2 Gene:Hcf / 43788 FlyBaseID:FBgn0039904 Length:1500 Species:Drosophila melanogaster
Sequence 2:NP_611647.1 Gene:CG6758 / 37532 FlyBaseID:FBgn0034704 Length:667 Species:Drosophila melanogaster


Alignment Length:709 Identity:138/709 - (19%)
Similarity:218/709 - (30%) Gaps:248/709 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 HQLDSNLTGF--RWKRVLNPT-------------GPQPRPRHGHRAINIKELMVVFGGG--NEGI 96
            |.|:..|..|  ||:.....|             |     |..|.|:.....|.|||||  ::..
  Fly    68 HNLEKGLIDFRLRWEVFSQQTVNGGAGALLSFIAG-----RFAHSAVRQDNSMYVFGGGSSSDTT 127

  Fly    97 VDELHVYNTVTNQWYVPVLKGDVPNGCAAYGFVVEGTRMFVFGGMIEYGKYS------------N 149
            .::|..::....:|..||..|..|:...:...|....::.:|||.    :|.            :
  Fly   128 FNDLWRFDLTHMRWARPVATGTYPSPKGSASMVAWRNQLILFGGW----RYPSLHPPYQPWCLFD 188

  Fly   150 EL--YELQATKWEWRKMYPESPDSGLSPCPRLGHSFTMVGEKIFLFGGLANESDDPKNNIPKYLN 212
            ||  |:|...:|..|       .|..||.|..|||.|:.|:::.:|||...:.|...|:     |
  Fly   189 ELHYYDLGKNRWLLR-------SSLSSPPPMAGHSATVHGDRMVVFGGYQIKDDFNVNS-----N 241

  Fly   213 DLYILDTRGVHSHNGKWIVPKTYGDS-PPPRESHTGISFATKSNGNLNLLIYGGMSGCR--LGDL 274
            |.::||.     ...:|..|...|:: |.||.....:..     |..:|||.||..|..  ..|.
  Fly   242 DTWVLDL-----PEQRWWQPLFVGNTRPSPRYGQIQVEL-----GRNHLLIVGGCGGANRVYTDA 296

  Fly   275 WLLETDSMTWSKPKTSGEAPLPRSLHSSTMIGNKMYVFGGWVPLVINDSKSTTEREW-----KCT 334
            |||:.....||                             |..:.:.:.:......|     |..
  Fly   297 WLLDMTRDVWS-----------------------------WKSIAVRNKRFGAVHMWCNPGCKVN 332

  Fly   335 NTLAVL--------DLETMTWENVTL--------DTVEENVP----------------------R 361
            |.|.|:        |.:.|....|.:        ....:|||                      :
  Fly   333 NYLVVVGPSPNMPQDFQMMKQSRVPVVGGRGPPPPNPLQNVPPRGYRIPVPDRRLGGGGLGGPGQ 397

  Fly   362 ARAGHCAVGIQSRLYVWSGRDGY---RKAWNNQVCCKDLWYLEVSKPLYAVKVALVRASTHALEL 423
            .|.|:...|:.........::.|   |:|..||                                
  Fly   398 NRGGNIRPGVGGAAAALGPQEQYLANRRAILNQ-------------------------------- 430

  Fly   424 SWTATTFAAAYVLQIQKIEQPLNTSSKLLSNNIVQQGTPTSAETSGINISANRSGSALGLGVEAT 488
                         .:|:.:|.|:.|:...:||..|   |.|...|.::.....:.:|        
  Fly   431 -------------HMQQAQQFLHNSNVNNNNNNYQ---PRSGRLSDLHAPPAAAAAA-------- 471

  Fly   489 STVLKLEKESLQLSGCQPETNVQPSVNDLLQSMSQPSSPASRADKDPLSSGGGTTFNLSTSVASV 553
                            .|.:   |.|        :|::|.|.||.| :.:......||:......
  Fly   472 ----------------SPPS---PPV--------RPNAPPSPADGD-VDAAQRLQRNLALRCRDN 508

  Fly   554 HPQI---------SVISSTAAVTGNDTASPSGAINSILQKFRPVVTAVRTSTTTAVSIATSTSDP 609
            .|::         ......|......:.|.|...|..:::....:.|:|.|..:|.:.|.....|
  Fly   509 EPRLPKRFDELYEDPFRMAAFNVPTRSRSASRDHNERIRRMEEKMNAIRNSRRSAPAAAQVEPQP 573

  Fly   610 LSVRVPSTMSANV----------VLSSSSSTLRIVP-----SVTASHSLRIASSQASGN 653
            |....|..:..||          :|.||...|..|.     .:..:....|.||..:||
  Fly   574 LRAPSPKRLRCNVQSLFVCDISGILDSSEPALEWVEYKNFGVLKGAPDRLILSSLIAGN 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HcfNP_524621.2 Kelch_1 73..110 CDD:279660 10/38 (26%)
KELCH repeat 74..115 CDD:276965 12/42 (29%)
KELCH repeat 123..175 CDD:276965 12/65 (18%)
Kelch_3 132..184 CDD:290151 17/65 (26%)
Kelch_5 175..221 CDD:290565 16/45 (36%)
KELCH repeat 178..239 CDD:276965 17/61 (28%)
Kelch_3 260..305 CDD:290151 12/46 (26%)
KELCH repeat 297..360 CDD:276965 10/83 (12%)
Kelch_3 306..371 CDD:290151 14/107 (13%)
FN3 <1307..1338 CDD:238020
FN3 1344..1448 CDD:238020
CG6758NP_611647.1 F-box-like 24..>59 CDD:289689
KELCH repeat 103..148 CDD:276965 13/44 (30%)
Kelch_3 112..162 CDD:290151 13/49 (27%)
KELCH repeat 154..209 CDD:276965 12/65 (18%)
Kelch_5 209..249 CDD:290565 16/49 (33%)
KELCH repeat 212..257 CDD:276965 15/54 (28%)
KELCH repeat 267..314 CDD:276965 15/80 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45446743
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1494
SonicParanoid 00.000 Not matched by this tool.
32.870

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