DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hcf and Klhdc3

DIOPT Version :10

Sequence 1:NP_524621.2 Gene:Hcf / 43788 FlyBaseID:FBgn0039904 Length:1500 Species:Drosophila melanogaster
Sequence 2:XP_038939750.1 Gene:Klhdc3 / 363192 RGDID:1307105 Length:398 Species:Rattus norvegicus


Alignment Length:324 Identity:90/324 - (27%)
Similarity:140/324 - (43%) Gaps:56/324 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FSSGERISASDLNSEHIIQAENHSFANRISMDMDVPDGHQLDSNLTGFRWKRVLNPTGPQ----- 70
            :|.|...|..|.  |.:.|.:.|.|                  |....||.: |.|..|.     
  Rat    27 YSFGGYCSGEDY--ETLRQIDVHIF------------------NAVSLRWTK-LPPVRPAVRGQA 70

  Fly    71 ---PRPRHGHRAINIKELMVVFGGGN--EGIVDELHVYNTVTNQWYVPVLKGDVPNGCAAYGFVV 130
               |..|:||..:.|.:.:.::||.|  ||..:.|:.::..|::|..|.:.|.||.....:...|
  Rat    71 PVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVSGTVPGARDGHSACV 135

  Fly   131 EGTRMFVFGGMIEYGK-YSNELYELQATKWEWRKMYPESPDSGLSPCP-RLGHSFTMVGEKIFLF 193
            .|..|::|||..:... :||::::|..:...|..:..:.     :|.. |..||.||:|..:::|
  Rat   136 LGKIMYIFGGYEQLADCFSNDIHKLDTSTMTWTLVCTKG-----NPARWRDFHSATMLGNHMYVF 195

  Fly   194 GGLANESDDPKNNIPKYLNDLYILDTRGVHSHNGKWI-VPKTYGDSPPPRESHTGISFATKSNGN 257
            ||.|:......:|...|.|.:.:.|||     ...|: .|.| ...|..|.||:...:    || 
  Rat   196 GGRADRFGPFHSNNEIYCNRIRVFDTR-----TEAWLDCPHT-PVLPEGRRSHSAFGY----NG- 249

  Fly   258 LNLLIYGGMSGCRLG----DLWLLETDSMTWSKPKTSGEAPLPRSLHSSTMIGNKMYVFGGWVP 317
             .|.|:||.: .||.    |||.....|.||.|.:..|:.|.||......::|:|:.:|||..|
  Rat   250 -ELYIFGGYN-ARLNRHFHDLWKFNPGSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTSP 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HcfNP_524621.2 PLN02193 <59..363 CDD:177844 81/276 (29%)
KELCH repeat 74..115 CDD:276965 13/42 (31%)
KELCH repeat 123..175 CDD:276965 10/52 (19%)
KELCH repeat 178..239 CDD:276965 19/61 (31%)
KELCH repeat 297..360 CDD:276965 7/21 (33%)
FN3 <1307..>1381 CDD:442628
FN3 <1307..1338 CDD:238020
FN3 1344..1448 CDD:238020
Klhdc3XP_038939750.1 NanM 14..308 CDD:442289 87/319 (27%)
KELCH repeat 14..62 CDD:276965 12/55 (22%)
KELCH repeat 77..124 CDD:276965 14/46 (30%)
KELCH repeat 128..173 CDD:276965 10/44 (23%)
KELCH repeat 180..236 CDD:276965 19/61 (31%)
KELCH repeat 239..283 CDD:276965 18/50 (36%)
Blue background indicates that the domain is not in the aligned region.

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