DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hcf and fbxo42

DIOPT Version :10

Sequence 1:NP_524621.2 Gene:Hcf / 43788 FlyBaseID:FBgn0039904 Length:1500 Species:Drosophila melanogaster
Sequence 2:NP_001428920.1 Gene:fbxo42 / 335459 ZFINID:ZDB-GENE-030131-7399 Length:629 Species:Danio rerio


Alignment Length:700 Identity:139/700 - (19%)
Similarity:231/700 - (33%) Gaps:219/700 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 VTNQWYVPVLKGDVPNGCAAYGF---VVEGT------------------------------RMFV 137
            |..||| .::|| |.:.| .:||   :.||.                              .|:|
Zfish    57 VCKQWY-RLIKG-VAHQC-YHGFLRAIQEGNIQWESRTYPYPGTPITQRFSHSACYYDSNQSMYV 118

  Fly   138 FGGMIEYGKYS--NELYELQATKWEWRKMYPESPDSGLSPCPRLGHSFTMVGEKIFLFGGLANES 200
            |||..:....:  |:|:.|.....||.:...    ||..|.|:.|.:..|.|:.:.||||....|
Zfish   119 FGGCTQSSCNAAFNDLWRLDLNSKEWIRPLA----SGSYPSPKAGATLVMYGDLLVLFGGWTRPS 179

  Fly   201 DDPKNNIPKYLNDLYILDTRGVHSHNGKW--IVPKTYGDSPPPRESHTGISFATKSNGNLNLLIY 263
            ..|.:...::.::::      .:|.:..|  .:..|:|  |||...|:  |...:|    .::::
Zfish   180 PYPLHQPERFFDEIH------TYSPSKNWWNCIVTTHG--PPPMAGHS--SSVIRS----TMVVF 230

  Fly   264 GGMSGCR--LGDLWLLETDSMTWSKPKTSGEAPLPRSLHSSTMIGNKMYVFGGWVPLVINDSKST 326
            ||..|.|  ..::|:|:.:..|||||..||.:|.||               ||...:|:::    
Zfish   231 GGSLGARQMSNEVWVLDLEQWTWSKPTISGPSPHPR---------------GGQSQIVMDE---- 276

  Fly   327 TEREWKCTNTLAVLDLETMTWENVTLDTVEENVPRARAGHCAVGIQSRLYVWSGRDGYRKAWNNQ 391
                    .||.:|                        |.|. |..:.|                
Zfish   277 --------ETLLIL------------------------GGCG-GPNALL---------------- 292

  Fly   392 VCCKDLWYLEVSKPLYAVKVALVRASTHALELSW--TATTFAAAYVLQIQ------KIEQPLNTS 448
               ||.|.|.:|.|.:..:...|....|.....|  .|.......|:..|      .:...||:.
Zfish   293 ---KDAWLLHMSDPCWTWQQLRVENEDHGAPELWCHPACKVGQCVVVFSQAPSGRAPLSPSLNSR 354

  Fly   449 SKLLSNNIVQQGTPTSAETSGINISANRSGSALGLGVEA--------------------TSTVLK 493
            ...:|:.....|....:..|...:.:..:|:.||...||                    :|:..:
Zfish   355 PSPISSTPAPLGPDPPSLRSQSPVRSGAAGAVLGAVEEAPCVNGRWGTLRPRASARASSSSSPSR 419

  Fly   494 LEKESLQLSGCQPETNVQPSVNDLLQSMSQPSSPASRA----DKDPLSSGGGTTFNLSTSVASVH 554
            .......|:|..|.....|     :|..|.|:.|...|    |..|.|:.|     |.|...|..
Zfish   420 GPDSPPLLNGASPSPRTSP-----VQQASPPARPPGPADLSWDGSPPSANG-----LHTPPGSPR 474

  Fly   555 PQISVISSTAAVTGNDTASPSGAINSILQKFRPVVTAVRTSTTTAVSIATSTSDPLSVRV----P 615
            .....:|..|...|.:....|.::.|     .|.......|..:....|.::..|::.|:    |
Zfish   475 TPPGAVSPAALRRGLEAVKASSSLPS-----PPPAPQPGPSAPSGTPPAPASPPPIARRLGHHPP 534

  Fly   616 STMSANVVLSSSSSTLRI---VPSVTASHSLRIASSQASGNNCRSSSAINILKTALPNVAVQSQP 677
            .:::....|..:.|...:   :..|:.:.:..:.:.:..|:....|             ||...|
Zfish   535 QSLNVGKPLYQALSCKPMQMYLLDVSRARTQGVVAWRVYGSGGAPS-------------AVTGPP 586

  Fly   678 TSSTTTSIGGKQYFIQKPLTLAPNVQLQFVKTSGGM-----TVQTLPKVN 722
            .:|..|.:.|:...|                ..||:     .|:..||.|
Zfish   587 ETSLHTVVQGRGELI----------------IFGGLMDKKQNVKYYPKTN 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HcfNP_524621.2 PLN02193 <59..363 CDD:177844 67/295 (23%)
KELCH repeat 74..115 CDD:276965 4/8 (50%)
KELCH repeat 123..175 CDD:276965 17/86 (20%)
KELCH repeat 178..239 CDD:276965 13/62 (21%)
KELCH repeat 297..360 CDD:276965 7/62 (11%)
FN3 <1307..>1381 CDD:442628
FN3 <1307..1338 CDD:238020
FN3 1344..1448 CDD:238020
fbxo42NP_001428920.1 None
Blue background indicates that the domain is not in the aligned region.

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