DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hcf and Klhdc10

DIOPT Version :10

Sequence 1:NP_524621.2 Gene:Hcf / 43788 FlyBaseID:FBgn0039904 Length:1500 Species:Drosophila melanogaster
Sequence 2:XP_006236263.1 Gene:Klhdc10 / 312199 RGDID:1309792 Length:439 Species:Rattus norvegicus


Alignment Length:422 Identity:86/422 - (20%)
Similarity:137/422 - (32%) Gaps:160/422 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 GPQPRP-RHGHRAINIKELMVVFGGGNEG-------------IVDELHVYNTVTNQWYVPVLKGD 118
            |.:|.| |.|||.:.....:.||||.|..             :..||..|:..|..|:.....|.
  Rat    82 GHRPPPARSGHRCVADNTNLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGVWHQMGTDGY 146

  Fly   119 VPNGCAAYGFVVEGTRMFVFGGM-IEYGKYS-NELYELQATKWEWRKMYPESPDSGLSPCPRLGH 181
            :|...|:...|:.|..:.||||. |.:|:.: |:::........|..:    ...|..|....|.
  Rat   147 MPRELASMSLVLHGNNLLVFGGTGIPFGESNGNDVHVCNVKYKRWALL----SCRGKRPSRIYGQ 207

  Fly   182 SFTMVGEKIFLFGGLANESDDPKNNIPKYLNDLYILDTRGVHSHNGKWIVPKTYGDSPPPRESHT 246
            :..::...:::|||.                                                 |
  Rat   208 AMALINGSLYVFGGT-------------------------------------------------T 223

  Fly   247 GISFATKSNGNLNLLIYGGMSGCRLGDLWLLETDSMTWS--KPKT-SGEAPLPRSLHSSTMIGNK 308
            |..::|                    ||..|:.::|.|:  ||.. |.:.|..|..|.....|.:
  Rat   224 GYIYST--------------------DLHKLDLNTMVWTQLKPNNLSCDLPEERYRHEIAHDGQR 268

  Fly   309 MYVFGG---WVPLVINDSKSTTEREWKCTNTLAVLDLETMTWENVTLDTVEE-NVPRARAGHCAV 369
            :|:.||   |....:              |.:...:|||..||.:.....|: ..|.||..|..|
  Rat   269 IYILGGGTSWTAYSL--------------NKIHAYNLETNAWEEIATKPHEKIGFPAARRCHSCV 319

  Fly   370 GIQSRLYVWSGRDGYRKAWNNQVCCKDLWYLEVS------------KPLY----AV--------- 409
            .|::.:::..|       :|.:|...|:|.|.:.            :|:|    ||         
  Rat   320 QIKNDVFICGG-------YNGEVILGDIWKLNLQTFQWVKLPATMPEPVYFHCAAVTPAGCMYIH 377

  Fly   410 ----------------KVALVRASTHALELSW 425
                            |:.||..|  .|||:|
  Rat   378 GGVVNIHENKRTGSLFKIWLVVPS--LLELAW 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HcfNP_524621.2 PLN02193 <59..363 CDD:177844 63/317 (20%)
KELCH repeat 74..115 CDD:276965 14/53 (26%)
KELCH repeat 123..175 CDD:276965 12/53 (23%)
KELCH repeat 178..239 CDD:276965 4/60 (7%)
KELCH repeat 297..360 CDD:276965 14/66 (21%)
FN3 <1307..>1381 CDD:442628
FN3 <1307..1338 CDD:238020
FN3 1344..1448 CDD:238020
Klhdc10XP_006236263.1 NanM 86..398 CDD:442289 77/405 (19%)
KELCH repeat 89..147 CDD:276965 15/57 (26%)
KELCH repeat 151..201 CDD:276965 12/53 (23%)
KELCH repeat 205..253 CDD:276965 15/116 (13%)
KELCH repeat 257..310 CDD:276965 14/66 (21%)
KELCH repeat 313..359 CDD:276965 10/52 (19%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.