DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hcf and Klhdc4

DIOPT Version :10

Sequence 1:NP_524621.2 Gene:Hcf / 43788 FlyBaseID:FBgn0039904 Length:1500 Species:Drosophila melanogaster
Sequence 2:NP_663580.2 Gene:Klhdc4 / 234825 MGIID:2384569 Length:584 Species:Mus musculus


Alignment Length:366 Identity:84/366 - (22%)
Similarity:144/366 - (39%) Gaps:86/366 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 PDGHQLDS-------NLTGFRWKRVLNPTGPQPRPRHGHRAINIKELMVVFGGGNEGIVD----- 98
            |||.|...       :|....|:::.:..||.  .|.|||.:..|..:::|||.:|...|     
Mouse   144 PDGEQFYHYKDLWVLHLATKTWEQIRSTGGPS--GRSGHRMVAWKRQLILFGGFHESARDYIYYS 206

  Fly    99 ELHVYNTVTNQW--YVPVLKGDVPNGCAAYGFVVEGTRMFVFGGM--------IEYGKYSNELYE 153
            :::.::..|.||  ..|...|..|..........:|: :.::||.        ::.|...::::.
Mouse   207 DVYTFSLDTFQWSKLSPSGPGPTPRSGCLMAVTPQGS-IAIYGGYSKQRVKKDVDKGTQHSDMFL 270

  Fly   154 LQAT-----KWEWRKMYPESPDSGLSPCPRLGHSFTMV-GEKIFLFGGLANESDDPKNNIPKYLN 212
            |:..     ||.|.::.|    ||:.|..|.|.|..:. ..:|.:|||:.:|.:: ::....:.:
Mouse   271 LKPAEGGEGKWAWTRINP----SGVKPTARSGFSVAVAPNHQILVFGGVCDEEEE-ESLEGSFFS 330

  Fly   213 DLYILDTRGVHSHNGKWIVPKTYG--------------DSPPPRESHTGISFATK---------S 254
            ||||.|     |...:|...:..|              |.....|..||.|.|.:         |
Mouse   331 DLYIYD-----SAKSRWFAAQLKGPKSEKKKRRRGKAEDPEGTTEQETGGSSAPEPLEVIKEVVS 390

  Fly   255 NGNLNLLIYGGMSGCRLGDLWLLETDSMTWSKPKTSGEAPLPRSLHSSTMIGNK---MYVFGGWV 316
            .....:.|...::...||.....:.|... |:..::|:.|.||   |:.|:..|   :||:||. 
Mouse   391 EDGTVVTIKQVLTPSGLGVQPSPKADDSA-SEASSTGQEPCPR---SNAMLAVKHGLLYVYGGM- 450

  Fly   317 PLVINDSKSTTE----------REWKCTNTLAVLDLETMTW 347
             ....|.:.|..          .|||   ||..:|.::..|
Mouse   451 -FEAGDRQVTLSDLYCLDLHKMEEWK---TLVEMDPKSQEW 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HcfNP_524621.2 PLN02193 <59..363 CDD:177844 79/346 (23%)
KELCH repeat 74..115 CDD:276965 14/47 (30%)
KELCH repeat 123..175 CDD:276965 11/64 (17%)
KELCH repeat 178..239 CDD:276965 17/75 (23%)
KELCH repeat 297..360 CDD:276965 17/64 (27%)
FN3 <1307..>1381 CDD:442628
FN3 <1307..1338 CDD:238020
FN3 1344..1448 CDD:238020
Klhdc4NP_663580.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..33
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 50..69
NanM 59..345 CDD:442289 51/213 (24%)
KELCH repeat 64..115 CDD:276965
Kelch 1 77..129
KELCH repeat 119..174 CDD:276965 6/29 (21%)
Kelch 2 133..187 12/44 (27%)
KELCH repeat 177..223 CDD:276965 13/45 (29%)
Kelch 3 188..238 11/49 (22%)
KELCH repeat 231..293 CDD:276965 11/66 (17%)
Kelch 4 243..289 8/50 (16%)
Kelch 5 308..361 13/58 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 348..381 7/32 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 405..433 8/31 (26%)
Kelch_1 431..480 CDD:396078 16/56 (29%)
KELCH repeat 432..480 CDD:276965 15/55 (27%)
Kelch 6 443..494 13/50 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 482..533 1/6 (17%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.