DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hcf and slim

DIOPT Version :10

Sequence 1:NP_524621.2 Gene:Hcf / 43788 FlyBaseID:FBgn0039904 Length:1500 Species:Drosophila melanogaster
Sequence 2:XP_315108.4 Gene:slim / 1275829 VectorBaseID:AGAMI1_008006 Length:466 Species:Anopheles gambiae


Alignment Length:388 Identity:77/388 - (19%)
Similarity:136/388 - (35%) Gaps:122/388 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 PRPRHGHRAINIKELMVVFGGGNEG----------------IVDELHVYNTVTNQWYVPV-LKGD 118
            |:.|.|||.:.....:..|||.|..                :..||..|:.:..:|.:.: ...|
Mosquito    96 PKARSGHRIVCSDSSVYCFGGFNPNNSLARDGNHDQREDMYLFQELWKYDMIRKEWTLLLDSNND 160

  Fly   119 VPNGCAAYGFVVEGTRMFVFGG------------------------MIE-----------YG--- 145
            :|...|:...::.|..:.||||                        ::|           ||   
Mosquito   161 LPAELASNAMLLCGETIMVFGGTGYPFGVNCSNRLHVCVPRRRPKDLLEVEVKGDPPPPQYGQAI 225

  Fly   146 ----------------KYSNELYELQATKWEWRKMYPESPDSGLSPCPRLGHSFTMVGEKIFLFG 194
                            :|:.:::.|......|..:|..:.:....|..|..|.......||::.|
Mosquito   226 VINDNYLYSIGGTNGFEYTLDIHRLHLPSKTWECVYECNQNIREDPSGRYRHELAHDDSKIYVIG 290

  Fly   195 GLANESDDPKNNIPKYLNDLYILDTRGVHSHNGKWIVPKTYGDSPPPRESHTGISFATK------ 253
            |..:::....:|||.|          .:.::..:::|.|     |.|..:..||..|.|      
Mosquito   291 GGTSDAVFILSNIPVY----------DIKANKWEYMVTK-----PDPLANSPGIPTARKCHSCVQ 340

  Fly   254 --SNGNLNLLIYGGMSGCR-LGDLWLLETDSMTWSKPKTSGEAPLPRSLHSSTMIGNK-MYVFGG 314
              ::..|.:::.||..|.. ..|:|.|...:|.|.|.:.| :.|.|...|.:.:..:. |::|||
Mosquito   341 IRTDQGLEVIVAGGYDGVNYYNDIWKLSLSTMQWKKMQKS-QLPYPLFFHDAAVTSDGCMHIFGG 404

  Fly   315 WVPLVINDSKSTTEREWKCTNTL-----AVLDLETMTWE-----------NVTLDTVEENVPR 361
                 |..:.:|..|    |:||     .:..|..:.||           ....:.:|..:||
Mosquito   405 -----IRYNNNTNVR----TDTLYRMWTTIPRLSVIAWEALLHYIPSLPSRTKEELLEAGIPR 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HcfNP_524621.2 PLN02193 <59..363 CDD:177844 77/388 (20%)
KELCH repeat 74..115 CDD:276965 12/57 (21%)
KELCH repeat 123..175 CDD:276965 13/105 (12%)
KELCH repeat 178..239 CDD:276965 12/60 (20%)
KELCH repeat 297..360 CDD:276965 15/79 (19%)
FN3 <1307..>1381 CDD:442628
FN3 <1307..1338 CDD:238020
FN3 1344..1448 CDD:238020
slimXP_315108.4 Kelch_1 98..154 CDD:396078 12/55 (22%)
KELCH repeat 99..161 CDD:276965 12/61 (20%)
NanM 160..428 CDD:442289 58/292 (20%)
KELCH repeat 165..217 CDD:276965 7/51 (14%)
KELCH repeat 221..270 CDD:276965 6/48 (13%)
KELCH repeat 274..330 CDD:276965 15/70 (21%)
KELCH repeat 333..377 CDD:276965 10/43 (23%)
KELCH repeat 386..430 CDD:276965 12/52 (23%)
Blue background indicates that the domain is not in the aligned region.

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