DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hcf and fbxo42

DIOPT Version :10

Sequence 1:NP_524621.2 Gene:Hcf / 43788 FlyBaseID:FBgn0039904 Length:1500 Species:Drosophila melanogaster
Sequence 2:XP_031761454.1 Gene:fbxo42 / 100379830 XenbaseID:XB-GENE-5785312 Length:685 Species:Xenopus tropicalis


Alignment Length:652 Identity:140/652 - (21%)
Similarity:229/652 - (35%) Gaps:169/652 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 LNPTGPQPRPRHGHRAINIKELMVVFGGGNEGIVDELHVYN------TVTNQWYVPVLKGDVPNG 122
            |.|.|.:.|.||......:.|.::      |.|:..|..|.      .|..:|| .::|| |.:.
 Frog    28 LPPRGARLRGRHSQLMAEMPEEVL------EYILSFLSPYQEHKTAALVCKKWY-RLIKG-VAHQ 84

  Fly   123 CAAYGFV----------------VEGT-----------------RMFVFGGMIEYGKYS--NELY 152
            | .:||:                ..||                 .|:||||..:....:  |:|:
 Frog    85 C-YHGFIKAVQDGNIQWESRTYPYPGTPITQRFSHSACYYDANQSMYVFGGCTQSSCNAAFNDLW 148

  Fly   153 ELQATKWEWRKMYPESPDSGLSPCPRLGHSFTMVGEKIFLFGGLANESDDPKNNIPKYLNDLYIL 217
            .|.....||.:...    ||..|.|:.|.:..:..|.:.||||....|..|.:...::.::::  
 Frog   149 RLDLNSKEWIRPLA----SGSYPSPKAGATLVVYKELLVLFGGWTRPSPYPLHQPERFFDEIH-- 207

  Fly   218 DTRGVHSHNGKW--IVPKTYGDSPPPRESHTGISFATKSNGNLNLLIYGGMSGCR--LGDLWLLE 278
                .:|.:..|  .:..|:|  |||...|:......|      ::::||..|.|  ..|:|:|:
 Frog   208 ----TYSPSKNWWNCIVTTHG--PPPMAGHSSCVIGDK------MIVFGGSLGSRQMSNDVWVLD 260

  Fly   279 TDSMTWSKPKTSGEAPLPRSLHSSTMIGNK-MYVFGGWVPLVINDSKSTTEREW-----KCTNTL 337
            .:..:||||..:|..|.||...|..:|..: :.:.||     .....:..:..|     :|    
 Frog   261 LEQWSWSKPTITGSCPHPRGGQSQIVIDTETILILGG-----CGGPNALFKDAWLLHMHEC---- 316

  Fly   338 AVLDLETMTWENVTLDTVEENVPR------ARAGHCAVGIQSRLYVWSGRDGYRKAWNNQVCCKD 396
                  ..||:.:.::..|...|.      .|.|.|.|....   ..|||.....:.|::     
 Frog   317 ------PWTWQQLKVENEEHGAPELWCHPACRVGQCVVVFSQ---APSGRAPLSPSLNSR----- 367

  Fly   397 LWYLEVSKPLYAVKVAL------------VRASTHA--LELSWTATTFAAAYVLQIQKIEQPLNT 447
                  ..|:.|...||            |||...|  :...|..          ::...|..||
 Frog   368 ------PSPISATPPALAPDPKEYRSHSPVRAPDEAPCVNGRWGT----------LRPRAQRQNT 416

  Fly   448 SSKLLSNNIVQQGTPTSAETSGINISANRSGSALGLGVEATSTVLKLEKESLQLSGCQPETNVQP 512
            ...       ::|:.:.|...|::...|..|.:.|..:::...||......:    |....|..|
 Frog   417 GGS-------REGSLSPARGDGLSPVLNGGGVSPGASLDSPLQVLSPPAAEV----CGTRKNSLP 470

  Fly   513 SVNDLLQSMSQPSSPASRADKDPLSSGGGTTFNLSTSVASVHPQISVISSTAAVTGNDTASPSGA 577
            ...||....|.......|  :||.....|.|.:..|:.....|.|             |.:.|||
 Frog   471 EQRDLCLGASDYEWERKR--RDPELDSAGRTPSEQTNGLHTPPHI-------------TTTLSGA 520

  Fly   578 IN-SILQKFRPVVTAVRTSTTTAVSIATSTSDPLSVRVPSTMSANVVLSSSSSTLRIVPSVTASH 641
            :: ..|::....|.|:.:|:.:|.....|...|.::..|.:.|     |.:.|..|.|.:....|
 Frog   521 VSPGALRRGLEAVRALASSSPSAPQSGASPRSPPTLPSPGSPS-----SGAESAPRPVQAQNEGH 580

  Fly   642 SL 643
            ||
 Frog   581 SL 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HcfNP_524621.2 PLN02193 <59..363 CDD:177844 78/355 (22%)
KELCH repeat 74..115 CDD:276965 10/46 (22%)
KELCH repeat 123..175 CDD:276965 17/86 (20%)
KELCH repeat 178..239 CDD:276965 12/62 (19%)
KELCH repeat 297..360 CDD:276965 10/68 (15%)
FN3 <1307..>1381 CDD:442628
FN3 <1307..1338 CDD:238020
FN3 1344..1448 CDD:238020
fbxo42XP_031761454.1 F-box_FBXO42 43..80 CDD:438882 8/43 (19%)
NanM 106..>309 CDD:442289 52/225 (23%)
KELCH repeat 115..164 CDD:276965 10/52 (19%)
KELCH repeat 170..225 CDD:276965 12/62 (19%)
KELCH repeat 228..267 CDD:276965 9/44 (20%)
PHA03247 <356..628 CDD:223021 57/279 (20%)
Blue background indicates that the domain is not in the aligned region.

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