DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PMCA and PMC1

DIOPT Version :9

Sequence 1:NP_001014689.3 Gene:PMCA / 43787 FlyBaseID:FBgn0259214 Length:1255 Species:Drosophila melanogaster
Sequence 2:NP_011509.1 Gene:PMC1 / 852878 SGDID:S000002974 Length:1173 Species:Saccharomyces cerevisiae


Alignment Length:1265 Identity:422/1265 - (33%)
Similarity:597/1265 - (47%) Gaps:332/1265 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 KQLRELMEHRGREGVMKIAENGGIHELCKKLYTSPNEGLS---GSKADEEHRRETFGSNVIPPKP 77
            |.:|..:...|.|.          :.|.|.|.|..|.|:|   .|...:.:|.:.:|.|.:|.:.
Yeast    46 KSIRSFVRLFGYES----------NSLFKYLKTDKNAGISLPEISNYRKTNRYKNYGDNSLPERI 100

  Fly    78 PKTFLTLVWEALQDVTLIILEVAALVSLGLSFYK------PADEDAPVLQEEEEHHGWIEGLAIL 136
            ||:||.|||.|..|.|:.:|.|||:||..|..|:      ..|.:...:::.:    ||||:||:
Yeast   101 PKSFLQLVWAAFNDKTMQLLTVAAVVSFVLGLYELWMQPPQYDPEGNKIKQVD----WIEGVAIM 161

  Fly   137 ISVIVVVIVTAFNDYSKERQFRGLQNRIEGEHKFSVIRGGEVCQISVGDILVGDIAQVKYGDLLP 201
            |:|.|||:|:|.|||.||.||..| |:.:...|..|||..:...||:..:||||:..::.||::|
Yeast   162 IAVFVVVLVSAANDYQKELQFAKL-NKKKENRKIIVIRNDQEILISIHHVLVGDVISLQTGDVVP 225

  Fly   202 ADGCLIQSNDLKVDESSLTGESDHVKKGP--------------------------DV-------- 232
            || |::.|...:.||||:||||:.::|.|                          ||        
Yeast   226 AD-CVMISGKCEADESSITGESNTIQKFPVDNSLRDFKKFNSIDSHNHSKPLDIGDVNEDGNKIA 289

  Fly   233 DPMVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGAAVDEQEAEIKKMKKEAKRANKQKNLTGE 297
            |.|::||:.::.|.|:.|:|:||:||..|...|.|.|                            
Yeast   290 DCMLISGSRILSGLGRGVITSVGINSVYGQTMTSLNA---------------------------- 326

  Fly   298 NDGRSQIKGSQAPSQRETVTSEITKSESEGNHLPQSSSSGAAETGHKKEKSVLQAKLTKLAIQIG 362
                                                          :.|.:.||..|::||..|.
Yeast   327 ----------------------------------------------EPESTPLQLHLSQLADNIS 345

  Fly   363 YAGSTIAVLTVIILIIQFCIKTFVIDE-------KPWKNTYANNLVKHLIIGVTVLVVAVPEGLP 420
            ..|...|::..::|..::..  ::|.|       .|.:.  .:..:...|..:||:|||||||||
Yeast   346 VYGCVSAIILFLVLFTRYLF--YIIPEDGRFHDLDPAQK--GSKFMNIFITSITVIVVAVPEGLP 406

  Fly   421 LAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVVQSY---------- 475
            |||||:||::..:|.||.||||.|.:|||||:|||:|||||||||.|.||||:.:          
Yeast   407 LAVTLALAFATTRMTKDGNLVRVLRSCETMGSATAVCSDKTGTLTENVMTVVRGFPGNSKFDDSK 471

  Fly   476 --------------ICEKLCKVLPTLSDIPQHVGNLITMGISVNSA------YTSN--------- 511
                          :.|:.|.         ..:.|.:...|.:||.      |..|         
Yeast   472 SLPVSEQRKLNSKKVFEENCS---------SSLRNDLLANIVLNSTAFENRDYKKNDKNTNGSKN 527

  Fly   512 -----------------------------IMAGHNPGDLPIQVGNKTECALLGFVQ-GLGV---K 543
                                         :....|.|.....:|:|||.|||...: .||:   :
Yeast   528 MSKNLSFLDKCKSRLSFFKKGNREDDEDQLFKNVNKGRQEPFIGSKTETALLSLARLSLGLQPGE 592

  Fly   544 YQSIRDEITE----DKFTRVYTFNSVRKSMGTVIPRPNGG-----YRLYTKGASEIIMKKCAFIY 599
            .|.:||:..|    :|..:...|.|.||..|.|:....|.     ||.:.|||:||:.|.|::..
Yeast   593 LQYLRDQPMEKFNIEKVVQTIPFESSRKWAGLVVKYKEGKNKKPFYRFFIKGAAEIVSKNCSYKR 657

  Fly   600 GHEGTLEKFTRDMQERLIREVIEPMACDGLRTISVAYRDFV---------------PGKAAINEV 649
            ..:.|||:...|.::....| |:.:|.|.||.||||::||.               |..||::.:
Yeast   658 NSDDTLEEINEDNKKETDDE-IKNLASDALRAISVAHKDFCECDSWPPEQLRDKDSPNIAALDLL 721

  Fly   650 HIDGEPNWDDEENIMTNLTCLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIASK 714
            .           |....|....::||:||:|..|.:::::|||||:||||||||||.||::||..
Yeast   722 F-----------NSQKGLILDGLLGIQDPLRAGVRESVQQCQRAGVTVRMVTGDNILTAKAIARN 775

  Fly   715 CGILR---PNDDFLILEGKEF-----NRRIRDSNGDIQQHLIDKVWPKLRVLARSSPTDKYTLVK 771
            |.||.   .::.:..:||.||     |.|||             :.|.|||||||||.||..||:
Yeast   776 CAILSTDISSEAYSAMEGTEFRKLTKNERIR-------------ILPNLRVLARSSPEDKRLLVE 827

  Fly   772 GIIDSTVSENREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVM 836
                 |:....:|||||||||||.||||.|||||:|||:||:||:|||||||..|:||:||.|:.
Yeast   828 -----TLKGMGDVVAVTGDGTNDAPALKLADVGFSMGISGTEVAREASDIILMTDDFSAIVNAIK 887

  Fly   837 WGRNVYDSIAKFLQFQLTVNVVAVIVAFIGACAVQD--SPLKAVQMLWVNLIMDTLASLALATEF 899
            |||.|..||.||:||||.||:.|||:.|:.:.|..|  |.|.|||:||:||||||||:|||||:.
Yeast   888 WGRCVSVSIKKFIQFQLIVNITAVILTFVSSVASSDETSVLTAVQLLWINLIMDTLAALALATDK 952

  Fly   900 PTPDLLLRKPYGRTKPLISRTMMKNILGQALYQLIIIFGLLFVGDVIL------DIESGRGQELN 958
            |.|:::.|||.||:..|||.:..|.||.||..|||:.|.|.|.|..:.      :|.|.:.|:||
Yeast   953 PDPNIMDRKPRGRSTSLISVSTWKMILSQATLQLIVTFILHFYGPELFFKKHEDEITSHQQQQLN 1017

  Fly   959 AGPTQHFTIIFNTFVMMTLFNEINARKIH--------------GQRNVIEGLLTNPIFYTIWIFT 1009
            |       :.|||||.:..|..:.:||:.              ...|..:.|..|..|.||....
Yeast  1018 A-------MTFNTFVWLQFFTMLVSRKLDEGDGISNWRGRISAANLNFFQDLGRNYYFLTIMAII 1075

  Fly  1010 MISQVLIIQYGKMAFSTKALTLDQWLWCIFFGIGTLVWGQLITSVPTRKLPKILS---------- 1064
            ...||||:.:|...||....|...|:..:..|:.:|:.|.|:...|.....|:..          
Yeast  1076 GSCQVLIMFFGGAPFSIARQTKSMWITAVLCGMLSLIMGVLVRICPDEVAVKVFPAAFVQRFKYV 1140

  Fly  1065 WG-----RGHPEEYTDGMNLGEERFDSIDS 1089
            :|     :.|..::.|...|.||. ||.:|
Yeast  1141 FGLEFLRKNHTGKHDDEEALLEES-DSPES 1169

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PMCANP_001014689.3 ATPase-IIB_Ca 1..1057 CDD:273668 412/1216 (34%)
Cation_ATPase_N 36..104 CDD:279080 26/70 (37%)
E1-E2_ATPase 172..448 CDD:278548 84/316 (27%)
Cation_ATPase 505..598 CDD:289987 36/149 (24%)
HAD_like 676..807 CDD:119389 69/138 (50%)
Cation_ATPase_C 873..1051 CDD:279079 74/197 (38%)
ATP_Ca_trans_C 1096..1142 CDD:289209
PMC1NP_011509.1 ATPase-IIB_Ca 15..1123 CDD:273668 412/1216 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 109 1.000 Domainoid score I1409
eggNOG 1 0.900 - - E2759_KOG0204
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 553 1.000 Inparanoid score I166
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53587
OrthoFinder 1 1.000 - - FOG0000362
OrthoInspector 1 1.000 - - oto99047
orthoMCL 1 0.900 - - OOG6_100143
Panther 1 1.100 - - LDO PTHR24093
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R99
SonicParanoid 1 1.000 - - X220
TreeFam 1 0.960 - -
1211.860

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