DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PMCA and atp2c2

DIOPT Version :9

Sequence 1:NP_001014689.3 Gene:PMCA / 43787 FlyBaseID:FBgn0259214 Length:1255 Species:Drosophila melanogaster
Sequence 2:NP_001072524.1 Gene:atp2c2 / 779979 XenbaseID:XB-GENE-5873516 Length:1017 Species:Xenopus tropicalis


Alignment Length:1020 Identity:267/1020 - (26%)
Similarity:440/1020 - (43%) Gaps:220/1020 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 KIAENGGIHELCKKLYTSPNEGLSGSKADEEHRRETFGSNVIPPKPPKTFLTLVWE----ALQDV 92
            |.|.....:||.|.|......|||.....:...:.::....:....|      :|:    ...:.
 Frog   128 KEASRLNANELVKYLQVDVESGLSECSVLQRRIKHSWNEFQVDNTDP------IWKKYLGQFTNP 186

  Fly    93 TLIILEVAALVSLGLSFYKPADEDAPVLQEEEEHHGWIEGLAILISVIVVVIVTAFNDYSKERQF 157
            .:::|..:||||:....|    |||               ::|.:::::||.|....:|..|:..
 Frog   187 LILLLLGSALVSIITKEY----EDA---------------VSITVAILIVVTVAFVQEYRSEKSL 232

  Fly   158 RGLQNRIEGEHKFSVIRGGEVCQISVGDILVGDIAQVKYGDLLPADGCLIQSNDLKVDESSLTGE 222
            ..|...:..|  .:.||.|:...:...:::.||:..:..||.:|||..||::.||.|||||.|||
 Frog   233 EELNKLVPPE--CNCIRDGKQQHLLARELVPGDVVCLSVGDRVPADIRLIETTDLLVDESSFTGE 295

  Fly   223 SDHVKK-GPDVDP---------MVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGAAVDEQEAE 277
            ::...| ...||.         :|..||.|..|.||.:|..||..||.|.:|.::.|    :|..
 Frog   296 TEPCSKTHGSVDEASGIATLSNIVFMGTLVRYGRGKGLVIGVGEKSQFGEVFKMMQA----EETP 356

  Fly   278 IKKMKKEAKRANKQKNLTGENDGRSQIKGSQAPSQRETVTSEITKSESEGNHLPQSSSSGAAETG 342
            ...::|...|..||.:|                                                
 Frog   357 KTPLQKSMDRLGKQLSL------------------------------------------------ 373

  Fly   343 HKKEKSVLQAKLTKLAIQIGYAGSTIAVLTVIILIIQFCIKTFVIDEKPWKNTYANNLVKHLIIG 407
                            ...|..|        :|::|.:      :..||        |:....||
 Frog   374 ----------------FSFGIIG--------LIMLIGW------LQGKP--------LLSMFTIG 400

  Fly   408 VTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVV 472
            |::.|.|:|||||:.||::||..|.:|.....:|:.|...||:|....||||||||||.|.||..
 Frog   401 VSLAVAAIPEGLPIVVTVTLALGVMRMANKRVIVKKLPIVETLGCCNVICSDKTGTLTANEMTAT 465

  Fly   473 Q--------------SYICEKLCKVLPTLSDIPQ----HVGNLITMGISVNSAYTSNIMAGHNPG 519
            :              .|..:....:||:..::.:    .:|.|:..|...|:|...|        
 Frog   466 KLVTSDGLHAEVTGVGYEGKGYVSLLPSNEEVHEFSSVSIGKLVEAGCIANNAVIQN-------- 522

  Fly   520 DLPIQVGNKTECALLGFVQGLGVKYQSIRDEITEDKFTRVYTFNSVRKSMGT-VIPRPNGGYRLY 583
              ...:|..||.||:  |.|:.:...::.|.....|   ...|:|.::.|.. .|.|.|.....:
 Frog   523 --NTLMGQPTEGALV--VLGMKMGLSNVSDNYIRKK---EIPFSSEQRWMAVKCIERHNKEEIYF 580

  Fly   584 TKGASEIIMKKCAFIYGHEGTLEKFTRDMQERLIREVIEPMACDGLRTISVAYRDFVPGKAAINE 648
            .|||.|.:::.|. :|...|.....| ..|:.|..:..:.|...|||.:::|             
 Frog   581 MKGAFEEVIQHCT-MYNSSGRSLPVT-PQQKSLYLQEEKNMGMQGLRVLALA------------- 630

  Fly   649 VHIDGEPNWDDEENIMTNLTCLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIAS 713
                       ..:.:..||.|.:|||.||.|..|.:|::....:|::|:|:|||.:.||::|..
 Frog   631 -----------SGSELGKLTFLGLVGIIDPPRAGVSEAVQILLESGVSVKMITGDALETAQAIGR 684

  Fly   714 KCGILRPNDDFLILEGKEFNRRIRDSNGDIQQHLIDKVWPKLRVLARSSPTDKYTLVKGIIDSTV 778
            ..|:  .|.....:.|:|.::        |.:..:..:..|:.|..|:||..|..::|.:     
 Frog   685 NIGL--SNGHLKAISGEELDQ--------IDESTLSSIVTKVSVFYRTSPKHKLKIIKAL----- 734

  Fly   779 SENREVVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYD 843
            .:...:|.:||||.||..|||.||:|.|||..||||:|||:|:||.||:||:|:.|:..|:.::.
 Frog   735 QKTGAIVGMTGDGVNDAVALKSADIGVAMGKTGTDVSKEAADMILVDDDFSTIMNAIEEGKGIFY 799

  Fly   844 SIAKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEFPTPDLLLRK 908
            :|..|::|||:.::.|:.:..:.......:||.|:|:||:|:|||...:.:|..|....|.:.:.
 Frog   800 NIKNFVRFQLSTSISALSLITLSTVMNLPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDAIKQP 864

  Fly   909 PYGRTKPLISRTMMKNILGQALYQLIIIFGLLFVGDVILDIESGRGQELNAGPTQHFTIIFNTFV 973
            |....:.::||.::..||   |...|||.|.|||  ...:|..|:......      |:.|..||
 Frog   865 PRNAKEAILSRALILKIL---LSATIIISGTLFV--FWKEIPDGKVTPRTT------TMTFTCFV 918

  Fly   974 MMTLFNEINARKIHGQRNVIE-GLLTNPIFYTIWIFTMISQVLII 1017
            ...:||.:..|.::  :.:.| ||..|.:|:...:.:::.|:.:|
 Frog   919 FFDMFNALACRSLN--KTIFEIGLFKNRMFWYSVLGSILGQMAVI 961

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PMCANP_001014689.3 ATPase-IIB_Ca 1..1057 CDD:273668 267/1020 (26%)
Cation_ATPase_N 36..104 CDD:279080 12/71 (17%)
E1-E2_ATPase 172..448 CDD:278548 71/285 (25%)
Cation_ATPase 505..598 CDD:289987 23/93 (25%)
HAD_like 676..807 CDD:119389 39/130 (30%)
Cation_ATPase_C 873..1051 CDD:279079 42/146 (29%)
ATP_Ca_trans_C 1096..1142 CDD:289209
atp2c2NP_001072524.1 P-type_ATPase_SPCA 158..998 CDD:319779 258/990 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53587
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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