DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PMCA and atp1a1a.4

DIOPT Version :9

Sequence 1:NP_001014689.3 Gene:PMCA / 43787 FlyBaseID:FBgn0259214 Length:1255 Species:Drosophila melanogaster
Sequence 2:NP_571764.1 Gene:atp1a1a.4 / 64615 ZFINID:ZDB-GENE-001212-4 Length:1024 Species:Danio rerio


Alignment Length:1017 Identity:277/1017 - (27%)
Similarity:433/1017 - (42%) Gaps:258/1017 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 IHELCKKLYTSPNEGLSGSKADEEHRRETFGSNVIPPKPPKT-------------FLTLVWEALQ 90
            :.||.:|..|....|||.|:|.|...|:  |.|.:.| ||.|             |.||:|    
Zfish    49 LDELHRKYGTDLTRGLSSSRAKEVLARD--GPNALTP-PPTTPEWVKFCKQLFGGFSTLLW---- 106

  Fly    91 DVTLIILEVAALVSLGLSFYKPADEDAPVLQEEEEHHGWIEGLAILISVIVVVIVTAFNDYSKER 155
                 |..:...::.|:   :.|.||.|.          .:.|.:.|.:..|||:|....|.:|.
Zfish   107 -----IGAILCFLAYGI---QAASEDDPT----------NDNLYLGIVLAGVVIITGCFSYYQEA 153

  Fly   156 QFRGLQNRIEG--EHKFSVIRGGEVCQISVGDILVGDIAQVKYGDLLPADGCLIQSNDLKVDESS 218
            :...:....:.  ..:..|:|.||...|:..:::.||:.:||.||.:|||..:|.::..|||.||
Zfish   154 KSSKIMESFKNLVPQQALVVRDGEKKSINAEEVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSS 218

  Fly   219 LTGESDHVKKGPDV---DPM-----VLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGAAVDEQE 275
            |||||:...:.||.   :|:     ....|:.:||:.:.:|...|..:..|.|.||         
Zfish   219 LTGESEPQTRTPDFSNDNPLETRNIAFFSTNCVEGTARGIVINTGDRTVMGRIATL--------- 274

  Fly   276 AEIKKMKKEAKRANKQKNLTGENDGRSQIKGSQAPSQRETVTSEITKSESEGNHLPQSSSSGAAE 340
                                     .|.::|.|.|         |.|......|:          
Zfish   275 -------------------------ASSLEGGQTP---------IAKEIEHFIHI---------- 295

  Fly   341 TGHKKEKSVLQAKLTKLAIQIGYAGSTIAVLTVIILIIQFCIKTFVIDEKPWKNTYANNLVKHLI 405
                         :|.:|:.:|               :.|.|.:.::. ..|        ::.:|
Zfish   296 -------------ITGVAVFLG---------------VSFFILSLILG-YGW--------LEAVI 323

  Fly   406 IGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMT 470
            ..:.::|..|||||...||:.|..:.|:|.|.|.||::|:|.||:|:.:.||||||||||.||||
Zfish   324 FLIGIIVANVPEGLLATVTVCLTLTAKRMAKKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMT 388

  Fly   471 VVQSYICEKLCKV--------------LPTLSDIPQHVGNLITMGISVNSAYTSNIMAGHNPGDL 521
            |...:...::.:.              .||.|.:.: |..|....:.:.......|:.....|| 
Zfish   389 VAHMWFDSQIHEADTTENQSGTTFDRSSPTWSALAR-VAGLCNRAVFLADQRNVPILKRDTAGD- 451

  Fly   522 PIQVGNKTECALLGFVQGLGVKYQSIRDEITEDKFTRV--YTFNSVRKSMGTVIPRPNGG---YR 581
                  .:|.|||..::........:|     :|:|::  ..|||..|...::...||..   :.
Zfish   452 ------ASESALLKCIELCCGSVNEMR-----EKYTKIAEIPFNSTNKYQLSIHKNPNSSEPKHL 505

  Fly   582 LYTKGASEIIMKKCA--FIYGHEGTLEKFTRDMQERLIREVIEPMACDGLRTISVAYRDFVPGKA 644
            |..|||.|.|:.:|:  .|.|.:..|::..:|..:....|:      .||            |:.
Zfish   506 LVMKGAPERILDRCSTILIQGKQQPLDEEMKDAFQNAYVEL------GGL------------GER 552

  Fly   645 AINEVHI----DGEPN---WDDEE-NIMTNLTCLCVVGIE---DPVRPEVPDAIRKCQRAGITVR 698
            .:...|.    |..|.   :|.|| |..|.  .||.||:.   ||.|..||||:.||:.|||.|.
Zfish   553 VLGFCHFCLPDDQFPEGFAFDTEEVNFPTE--NLCFVGLMSMIDPPRAAVPDAVGKCRSAGIKVI 615

  Fly   699 MVTGDNINTARSIASKCGILRPNDDFL----------------------ILEGKEFNRRIRDSNG 741
            |||||:..||::||...||:...::.:                      ::.|.|......:...
Zfish   616 MVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVGEVNPRDAKACVVHGGELKSMSEEELD 680

  Fly   742 DIQQHLIDKVWPKLRVLARSSPTDKYTLVKGIIDSTVSENREVVAVTGDGTNDGPALKKADVGFA 806
            ||.:|..:.|:      ||:||..|..:|:|     ......:|||||||.||.|||||||:|.|
Zfish   681 DILKHHTEIVF------ARTSPQQKLIIVEG-----CQRQGAIVAVTGDGVNDSPALKKADIGVA 734

  Fly   807 MGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTVNVVAVIVAFIGACAVQ 871
            |||||:||:|:|:|:||.||||:|||..|..||.::|::.|.:.:.||.|:..:....:...|..
Zfish   735 MGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLLFIIANI 799

  Fly   872 DSPLKAVQMLWVNLIMDTLASLALATEFPTPDLLLRKP-YGRTKPLISRTMMKNILGQ-ALYQLI 934
            ..||..|.:|.::|..|.:.:::||.|....|::.|:| ..:|..|::..::....|| .:.|.:
Zfish   800 PLPLGTVTILCIDLGTDMVPAISLAYESAESDIMKRQPRNAKTDKLVNERLISMAYGQIGMMQAV 864

  Fly   935 IIFGLLFV---------GDV-----------ILDIESGRGQE 956
            ..|...||         .|:           :.|:|...||:
Zfish   865 AGFFSYFVILAENGFLPSDLVGIRVNWDDKYVNDLEDSYGQQ 906

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PMCANP_001014689.3 ATPase-IIB_Ca 1..1057 CDD:273668 277/1017 (27%)
Cation_ATPase_N 36..104 CDD:279080 22/77 (29%)
E1-E2_ATPase 172..448 CDD:278548 68/283 (24%)
Cation_ATPase 505..598 CDD:289987 23/99 (23%)
HAD_like 676..807 CDD:119389 54/155 (35%)
Cation_ATPase_C 873..1051 CDD:279079 25/106 (24%)
ATP_Ca_trans_C 1096..1142 CDD:289209
atp1a1a.4NP_571764.1 ATPase-IIC_X-K 32..1024 CDD:273445 277/1017 (27%)
Cation_ATPase_N 41..115 CDD:214842 22/77 (29%)
E1-E2_ATPase 135..366 CDD:278548 75/320 (23%)
Cation_ATPase 428..522 CDD:289987 24/105 (23%)
COG4087 607..753 CDD:226572 59/156 (38%)
Cation_ATPase_C 800..1009 CDD:279079 25/107 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53587
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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