DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PMCA and atp1a1a.3

DIOPT Version :9

Sequence 1:NP_001014689.3 Gene:PMCA / 43787 FlyBaseID:FBgn0259214 Length:1255 Species:Drosophila melanogaster
Sequence 2:NP_571763.1 Gene:atp1a1a.3 / 64614 ZFINID:ZDB-GENE-001212-3 Length:1024 Species:Danio rerio


Alignment Length:1042 Identity:287/1042 - (27%)
Similarity:439/1042 - (42%) Gaps:271/1042 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LKQLRELMEHRGREGVMKIAENGGIHELCKKLYTSPNEGLSGSKADEEHRRETFGSNVIPPKPPK 79
            ||:..|:.:|       |:.    :.||.:|..|..|:|||.::|.|...|:  |.|.:.| |..
Zfish    36 LKKEVEMDDH-------KLT----LEELSRKYGTDLNKGLSITRAKEILARD--GPNALTP-PVT 86

  Fly    80 T-------------FLTLVWEALQDVTLIILEVAALVSLGLSFYKPADEDAPVLQEEEEHHGWIE 131
            |             |.||:|            :.||:.......:.|.|:.|.  .:..:.|   
Zfish    87 TPEWVKFCRQLFGGFQTLLW------------IGALLCFFAYSIQAASEEEPA--NDNLYLG--- 134

  Fly   132 GLAILISVIVVVIVTAFNDYSKERQFR---GLQNRIEGEHKFSVIRGGEVCQISVGDILVGDIAQ 193
                |:...||.:...|:.|.:.:..|   ..:|.:  ..|..|:|.||...|...|::|||:.:
Zfish   135 ----LVLAFVVTVNGCFSYYQEAKSSRIMDSFRNLV--PQKALVVREGEKSVIDAEDVVVGDLVE 193

  Fly   194 VKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGPDV---DPM-----VLSGTHVMEGSGKMV 250
            ||.||.:|||..::.|...|||.|||||||:...:.|::   :|:     ....|:.::|:.:.|
Zfish   194 VKGGDRIPADIRIVSSQGCKVDNSSLTGESEPQTRAPEMSSDNPLETRNIAFFSTNCVDGAARGV 258

  Fly   251 VTAVGVNSQAGIIFTLLGAAVDEQEAEIKKMKKEAKRANKQKNLTGENDGRSQIKGSQAPSQRET 315
            |...|..:..|.|.:|                                  .|.::|.|.|..||.
Zfish   259 VVNTGDRTVMGRIASL----------------------------------ASSLEGGQTPIAREI 289

  Fly   316 VTSEITKSESEGNHLPQSSSSGAAETGHKKEKSVLQAKLTKLAIQIGYAGSTIAVLTVIILIIQF 380
                     ....|:                       :|.:|:   :.|.|..||::|:     
Zfish   290 ---------EHFIHI-----------------------ITGVAV---FLGLTFLVLSLIL----- 314

  Fly   381 CIKTFVIDEKPWKNTYANNLVKHLIIGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLD 445
                            ..|.::.:|..:.::|..||||||..||:.|..:.|:|.|.|.||::|:
Zfish   315 ----------------GYNWLEGVIFLIGIIVANVPEGLPATVTVCLTLTAKRMAKKNCLVKNLE 363

  Fly   446 ACETMGNATAICSDKTGTLTTNRMTVVQSYICEKLCKVLPTLSDIPQHVGNLITMGISVNSAYTS 510
            |.||:|:.|.||||||||||.|||||...:....:        .|.....|........:||..|
Zfish   364 AVETLGSTTTICSDKTGTLTQNRMTVAHMWFDNHI--------HIADTTENQTGASFDRSSATWS 420

  Fly   511 NI--MAG--------HNPGDLPI----QVGNKTECALLGFVQGLGVKYQSIRDEITEDKFTRVYT 561
            .:  :||        .|...:|:    ..|:.:|.|||..::........:|:..|  |...: .
Zfish   421 ALARVAGLCNRAVFQSNQSHIPVLKRDTAGDASESALLKCIELSCGSVAEMRENYT--KLAEI-P 482

  Fly   562 FNSVRKSMGTVIPRPNGG---YRLYTKGASEIIMKKCA--FIYGHEGTLEKFTRDMQERLIREVI 621
            |||..|...::...||..   :.|..|||.|.|:::|:  ||.|.|..::...:|..:....|: 
Zfish   483 FNSTNKYQVSIHKNPNSSEPKHLLVMKGAPERILERCSTIFIQGKEQPMDDEMKDAFQNAYLEL- 546

  Fly   622 EPMACDGLRTISVAYRDFVPGKAAINEVHI----DGEPN---WDDEE-NIMTNLTCLCVVGIE-- 676
                 .||            |:..:...|.    |..|.   :|.|| |..|.  .||.||:.  
Zfish   547 -----GGL------------GERVLGFCHFCLPDDQFPEGFAFDTEEMNFPTE--NLCFVGLMSM 592

  Fly   677 -DPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIASKCGILRPNDDFL--------------- 725
             ||.|..||||:.||:.|||.|.|||||:..||::||...||:...::.:               
Zfish   593 IDPPRAAVPDAVAKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVDDIAARLKIHIDEVN 657

  Fly   726 -------ILEGKEFNRRIRDSNGDIQQHLIDKVWPKLRVLARSSPTDKYTLVKGIIDSTVSENRE 783
                   ::.|.|......:...|:.||..:.|:      ||:||..|..:|:|     ......
Zfish   658 PRDAKACVIHGGELKNMTDEQLDDVLQHHTEIVF------ARTSPQQKLIIVEG-----CQRQGA 711

  Fly   784 VVAVTGDGTNDGPALKKADVGFAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKF 848
            :|||||||.||.|||||||:|.||||||:||:|:|:|:||.||||:|||..|..||.::|::.|.
Zfish   712 IVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKS 776

  Fly   849 LQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEFPTPDLLLRKP-YGR 912
            :.:.||..:..:....:........||..|.:|.::|..|.:.:::||.|....|::.|:| ...
Zfish   777 IAYTLTSKIPEMSPFLMFVLVGIPLPLGTVTILCIDLGTDMVPAISLAYETAESDIMKRQPRNAA 841

  Fly   913 TKPLISRTMMKNILGQALYQLIIIFGLLFVGDVIL-----------------------DIESGRG 954
            |..|::..::....||  ..:|...|..|...|||                       |:|...|
Zfish   842 TDRLVNERLISVSYGQ--IGMIQAVGGFFTYFVILAENGFLPYDLVGIRVGWEDRFLNDLEDSYG 904

  Fly   955 QE 956
            |:
Zfish   905 QQ 906

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PMCANP_001014689.3 ATPase-IIB_Ca 1..1057 CDD:273668 287/1042 (28%)
Cation_ATPase_N 36..104 CDD:279080 22/80 (28%)
E1-E2_ATPase 172..448 CDD:278548 71/283 (25%)
Cation_ATPase 505..598 CDD:289987 28/111 (25%)
HAD_like 676..807 CDD:119389 54/155 (35%)
Cation_ATPase_C 873..1051 CDD:279079 26/108 (24%)
ATP_Ca_trans_C 1096..1142 CDD:289209
atp1a1a.3NP_571763.1 ATPase-IIC_X-K 32..1024 CDD:273445 287/1042 (28%)
Cation_ATPase_N 41..115 CDD:214842 25/99 (25%)
E1-E2_ATPase 135..366 CDD:278548 79/322 (25%)
Cation_ATPase 428..522 CDD:289987 23/96 (24%)
COG4087 604..753 CDD:226572 60/159 (38%)
Cation_ATPase_C 800..1009 CDD:279079 26/109 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53587
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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