DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PMCA and CG6230

DIOPT Version :9

Sequence 1:NP_001014689.3 Gene:PMCA / 43787 FlyBaseID:FBgn0259214 Length:1255 Species:Drosophila melanogaster
Sequence 2:NP_609490.1 Gene:CG6230 / 34546 FlyBaseID:FBgn0027582 Length:1225 Species:Drosophila melanogaster


Alignment Length:878 Identity:180/878 - (20%)
Similarity:317/878 - (36%) Gaps:235/878 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 DGRPAQYGISLKQLRELMEHRGREGVMKIAENGGIHELCKKLYTSPNEGLSGSKADEEHRR--ET 67
            ||....|.:..|......|.|.....::...||.:     ..|:|..    |.:.:|:.:|  :|
  Fly   172 DGSTQYYFVFQKTKYVWNEDRKTFRAVEFPVNGLL-----STYSSSR----GLETEEDIKRATQT 227

  Fly    68 FGSNVIPPKPPKTFLTLVWEALQDVTLIILEVAALVSLGLSFYKPADEDAPVLQEEEEHHGWIEG 132
            :|:|.:....|:.....:..|  .....:.:|   .|:||                     |...
  Fly   228 YGNNEMEMVVPEFHELFIERA--TAPFFVFQV---FSVGL---------------------WCMD 266

  Fly   133 LAILISVIVVVIVTAFNDYSKERQFRGLQN-RIEGEHKFSV--IRGGEVCQISVGDILVGDIAQV 194
            .....|:..:.::.||.....::|.|.:.. |..|...:.:  .|..:...:...::|.||:..:
  Fly   267 DYWYYSLFTLFMLIAFECTIVKQQLRNMSEIRKMGNKPYLIYAFRQNKWRHLGSDELLPGDLVSI 331

  Fly   195 ---KYGDLLPADGCLIQSNDLKVDESSLTGESDHVKK-------GPDVDPMVLSGTHVMEGSGKM 249
               :..:::|.|..:::.:.: ||||.|||||..:.|       ..||:...       ||.|| 
  Fly   332 TRSQNDNIVPCDLVILRGSCI-VDESMLTGESVPLMKESLESLDNLDVEMDA-------EGDGK- 387

  Fly   250 VVTAVGVNSQAGIIFTLLGAAVDEQEAEIKKMKKEAKRANKQKNLTGENDGRSQIKGSQAPSQRE 314
                         :|.|.|.                                :::....||::  
  Fly   388 -------------LFVLFGG--------------------------------TKVVQHTAPTK-- 405

  Fly   315 TVTSEITKSESEGNHLPQSSSSG-AAETGHKKEKSVLQAKLTKLAIQIGYAGST---IAVLTVII 375
                       |....|.....| ...||.    :..|.||.: .|..|...:|   :.....|.
  Fly   406 -----------ESLRAPDGGCIGYVIRTGF----NTSQGKLLR-TILFGANRATENNVETFAFIA 454

  Fly   376 LIIQFCI--KTFVI---DEKPWKNTYANNLVKHLIIGVTVLVVA-VPEGLPLAVTLSLAYSVKKM 434
            .::.|.:  .::|.   .|.|.:|.|      .|.:..|:::.: :|..||:.:||::..|:.::
  Fly   455 FLMVFAVAAASYVWVKGSEDPERNRY------KLFLECTLILTSIIPPDLPIELTLAVNTSLIQL 513

  Fly   435 MKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVVQSYICEKLCKVLPTLSDIP--QHVGNL 497
            .|..............|.....|.||||||||:.:.|      |.:..:.|..:.:|  :..||.
  Fly   514 TKLFVFCTEPFRIPFAGKVQICCFDKTGTLTTDNLMV------EGIAGLAPNGACVPIEKAEGNT 572

  Fly   498 ITMGISVNSAYTSNIMAGHNPGDLPIQVGNKTECALLGFVQGLGVKYQSI---RDEITEDKFTRV 559
            :.:....:|      :|..:.|    .||:..|.|.|..|.....|..|:   |.:....|..:.
  Fly   573 VQVLACCHS------LALLDDG----LVGDPLEKATLAAVDWTLTKMDSVIPKRPQFKPLKIIQR 627

  Fly   560 YTFNSVRKSM----GTVIPRPNGGYRL-YTKGASEIIMKKCAFIYGHEGTLEKFTRDMQERLIRE 619
            |.|:|..|.|    |.:||..|....: ..|||.|:|.|          .|.:...|.:     :
  Fly   628 YHFSSALKRMSVLAGHLIPYSNEVKHIGAVKGAPEVIQK----------MLREVPADYE-----K 677

  Fly   620 VIEPMACDGLRTISVAYRDF-VPGKAAINEVHIDGEPNWDDEENIMTNLTCLCVVGIEDPVRPEV 683
            |....|..|.|.:::..:|. ..|...:.|:         ..|.:..:||....:.|..|::|:.
  Fly   678 VYLEYARRGARVLALGIKDLGTLGAQRVREM---------KREEVECDLTFAGFLIISCPMKPDS 733

  Fly   684 PDAIRKCQRAGITVRMVTGDNINTARSIASKCGILRPNDDFLILEGKEFNRRIRDS----NGD-- 742
            ...|::..::...|.|:|||:..||..:|.:....|..  .:||...|.:|:...|    :||  
  Fly   734 KSVIKELIQSSHKVVMITGDSPLTACHVARELRFTRKK--LIILTPPEEDRKNNWSWVSIDGDQS 796

  Fly   743 ------------------------------IQQH---LIDKVWPKLRVLARSSPTDKYTLVKGII 774
                                          :||:   .:.::.|::.|.||.:|..|..::    
  Fly   797 YELDTKPGSKKLSHLLATHDLCITGEGLQYLQQNQPQYMRQLLPQITVCARFAPKQKELVI---- 857

  Fly   775 DSTVSENREVVAVTGDGTNDGPALKKADVGFAM 807
             :.:.:......:.||||||..|||.|:||.::
  Fly   858 -TQLKQLGYCTLMCGDGTNDVGALKHANVGVSL 889

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PMCANP_001014689.3 ATPase-IIB_Ca 1..1057 CDD:273668 180/878 (21%)
Cation_ATPase_N 36..104 CDD:279080 13/69 (19%)
E1-E2_ATPase 172..448 CDD:278548 54/297 (18%)
Cation_ATPase 505..598 CDD:289987 28/100 (28%)
HAD_like 676..807 CDD:119389 39/169 (23%)
Cation_ATPase_C 873..1051 CDD:279079
ATP_Ca_trans_C 1096..1142 CDD:289209
CG6230NP_609490.1 P-ATPase-V 109..1193 CDD:273738 180/878 (21%)
E1-E2_ATPase 310..515 CDD:278548 53/282 (19%)
Cation_ATPase <590..664 CDD:289987 23/73 (32%)
COG4087 <850..901 CDD:226572 14/45 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438609
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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