DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PMCA and Atp8b3

DIOPT Version :9

Sequence 1:NP_001014689.3 Gene:PMCA / 43787 FlyBaseID:FBgn0259214 Length:1255 Species:Drosophila melanogaster
Sequence 2:XP_234937.3 Gene:Atp8b3 / 299616 RGDID:1307622 Length:1340 Species:Rattus norvegicus


Alignment Length:1424 Identity:281/1424 - (19%)
Similarity:476/1424 - (33%) Gaps:447/1424 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 RRETFGSNVIPPKPPKTFLTL---VWEALQDVT-LIILEVAALVSLGLSFYKPADEDAPVLQEEE 124
            |::.:.||.|.......|..|   ::|..:.|: |..|.:..|.|:      |.....|      
  Rat    41 RQKKYKSNAIHTAKYNVFSFLPLNLYEQFRRVSNLYFLFIIILQSI------PEISTLP------ 93

  Fly   125 EHHGWIEGLAILISVIVVVIVTAFNDYSKERQFRGLQNRIEGEHKFSVIRGGEVCQISVG----- 184
                |....|.|:.::::            |..|.|.:.| |.|:...|.....|||..|     
  Rat    94 ----WFTLFAPLVCLLMI------------RAARDLVDDI-GRHRSDRIINNRPCQILKGKSFLW 141

  Fly   185 ----DILVGDIAQVKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGPDVDPMVLSGTHVMEG 245
                ::.|||:..:...:::|||..|:.|.                                 |.
  Rat   142 KKWKNLCVGDVVCLSKDNIVPADLLLLAST---------------------------------EP 173

  Fly   246 SGKMVVTAVGVNSQAGIIFTLLGAAVDEQEAEIKKMKKEAKRANKQKNLTGE--NDGRSQIKGSQ 308
            |....:....::.:..:.|.........:....|||      |:.|..:|.|  |.......||.
  Rat   174 SSLCYLETADIDGETNLKFRQALMVTHHELTSPKKM------ASFQGIVTCEEPNSRMHHFVGSL 232

  Fly   309 APSQRETVTSEITKSESEGNHLPQSSSS------GAAETGHKKEKSVLQAKLTKLAIQIGYAGST 367
            ..:.|: ...:|......|..:..:.:.      ...:|...|....:..|.|||.:.:    :.
  Rat   233 EWNSRK-YPLDIGNLLLRGCKIRNTDTCYGLVIYAGLDTKIMKNCGKIHLKRTKLDLMM----NK 292

  Fly   368 IAVLTVIILIIQFCIKT----FVIDEKPWKNTYANNLVKH--------LIIGVTVLV-VAVPEGL 419
            :.:|..:.|:|.....|    |::.|...|:.|.:::...        :..|..:|: |.||..:
  Rat   293 LVILIFMSLVIASMFLTLGFAFMVKEFKAKHHYMSSMQGRTDAMDSFFIFWGFLILLSVMVPMAM 357

  Fly   420 PLAV-------------TLSLAY---SVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNR 468
            .:..             .||:.|   .:....:..:|..||      |....|.||||||||.|.
  Rat   358 FIIAEFIYLGNSIFINWDLSMYYEPLDIPAKARSTSLNDHL------GQVQYIFSDKTGTLTQNI 416

  Fly   469 MTVVQSYICEKLCKVLPTLSDIPQHVGNL-------------------------ITMGISVNS-- 506
            ||.       |.|.:.....|.....|.|                         :..|....:  
  Rat   417 MTF-------KKCCINGCTYDSDDEHGTLRKRNPYSWNPFADGKLQFYNKELESLVRGKQDRAVQ 474

  Fly   507 ------AYTSNIMAGHNPGDLPIQVGNKTECALLGFVQGLGVKYQSIRDEITEDKFT-------R 558
                  |....:|.......|..|..:..|.||:...:..|..:.|    .|:|..|       |
  Rat   475 EFWRLLAICHTVMVQEKDNQLLYQAASPDEEALVAAARNFGYVFLS----RTQDTITLVELGEER 535

  Fly   559 VY------TFNSVRKSMGTVIPRPNGGYRLYTKGASEIIMKKCAFIYGHEGTLEKFTRDMQERLI 617
            ||      .||||||.|..::..|.|...||||||..:|:::    ..|:|.:|..|        
  Rat   536 VYQVLAMMDFNSVRKRMSVLVRNPEGSICLYTKGADTVILER----LHHKGVMEATT-------- 588

  Fly   618 REVIEPMACDGLRTISVAYRDFVPGKAAINEVHIDGEPNWDDE-------------------ENI 663
            .||:...|...|||:.:||:|          |..|....|:.|                   ..:
  Rat   589 EEVLAAFAEQTLRTLCLAYKD----------VAEDAYKEWEPEHQEAALLLQNRAQALHQVYNKL 643

  Fly   664 MTNLTCLCVVGIEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIASKCGILRPNDDFLILE 728
            ..||..|.|..|||.::..||:.||..::..|.:.::|||...||.:|...|.:|  :::..|||
  Rat   644 EQNLQLLGVTAIEDKLQDGVPETIRCLKKGNIKMWVLTGDKPETAVNIGFACQLL--SENMSILE 706

  Fly   729 GKEFNRRIRD----------------------SNGDIQQHLIDKVWPKLRVLARSSPTDKYTLVK 771
            .|:....:.:                      .||:....|:..:..:.|.|.:::..|:.|...
  Rat   707 DKDIKGLLENYWDENEHQRAFQTMTHHNMALVINGEFLDQLLLSLRKEPRALVQNAVVDEATQEP 771

  Fly   772 GI--ID----------------------STVSENRE----------------------------- 783
            |:  :|                      |..|:.||                             
  Rat   772 GVSALDFLQARRISQMWRNFGTTMATSQSDASKTRESPEERRERAFVDLASKCQAVICCRVTPKQ 836

  Fly   784 ---VVAVT-----------GDGTNDGPALKKADVGFAMGIAGTD--VAKEASDIILTDDNFSSIV 832
               |||:.           |||.||...:|.||:|  :|:||.:  .|.:.||.:|.  .|..:.
  Rat   837 KALVVALVKKYQQVVTLAIGDGANDVNMIKTADIG--VGLAGQEGMQAVQNSDYVLA--QFCYLQ 897

  Fly   833 KAVM-WGRNVYDSIAKFLQFQLTVNVVAVIV-----AFIGACAVQDSPLKAVQMLWV-NLIMDTL 890
            :.:: .||..|..|.|||::.....|.:::.     .|.|..|   .||.....|.: ||:..||
  Rat   898 RLLLVHGRWSYMRICKFLRYFFYKTVASMMAQIWFSLFNGFSA---QPLYEGWFLALFNLLYSTL 959

  Fly   891 ASL--ALATEFPTPDLLLRKPYGRTKPLISRTMMKNILGQALYQLIIIFGLLFVGDVILDIESGR 953
            ..|  .|..:..|.:..|:.|     .|.:......:...:::...|..|.:             
  Rat   960 PVLYIGLFEQDVTAEKSLKMP-----ELYTAGQKDELFNYSIFVQAIAHGTI------------- 1006

  Fly   954 GQELNAGPTQHFTIIFNTFVMMTLFNEINARKIHGQRNVIEGLLTNPIFYTIWIFTMISQVLIIQ 1018
                        |.:.|.||.:.:..::....            ::|.:.:..:...||.:|   
  Rat  1007 ------------TSLINFFVTILVSYDMTKTG------------SSPDYQSFGVLVAISSLL--- 1044

  Fly  1019 YGKMAFSTKALTLDQWL----WCIFFGIGTLVWGQLITSVPTRKLPKILSWGRGHPEEYTDGMNL 1079
                     ::||:..|    |.:.| :||:| ..|.:.|....|.:.|...|..|:.:      
  Rat  1045 ---------SITLEVILVVKYWTLLF-VGTVV-VSLSSYVIFTSLTESLLLFRISPKTF------ 1092

  Fly  1080 GEERFDSIDSDKKPRAGQILWIRGLTRLQTQLRVIRAFRSTL-------------EDLNERRSMH 1131
             ...|...:..::| :..::.:..:|.....:..:|..|.|:             |:|....:|.
  Rat  1093 -PFLFADYNVIREP-SSLLVIVLNVTLNTLPMLAVRIIRRTVLKRHPKKEEEVPSEELTVEPAMR 1155

  Fly  1132 SLHSLRSPRTGIPVAVGGGHPLYNFNLLNPNYIKHQQQQEPKLPPQTQLNVSSGMMSPDISYIDE 1196
            ....:.:.|:....:...|:.    ||:....|..:.....:....|..|      ||:.|  :|
  Rat  1156 LRRGMPARRSSYAFSHHEGYA----NLITQGTILRRHTHVDEFYGDTACN------SPNPS--EE 1208

  Fly  1197 D-PQQQQRTLHNGLTSQRSSMPSNVPSSNQSFSKIAQTLQQKI-RGNIETKHSNGQNET 1253
            | |.|.:.::.|         |..:       |.:|:..:|.. :|:....|.|..::|
  Rat  1209 DVPWQHKESIFN---------PRKI-------SILAKKRRQHYGKGSQGEVHPNASSQT 1251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PMCANP_001014689.3 ATPase-IIB_Ca 1..1057 CDD:273668 245/1211 (20%)
Cation_ATPase_N 36..104 CDD:279080 11/43 (26%)
E1-E2_ATPase 172..448 CDD:278548 54/321 (17%)
Cation_ATPase 505..598 CDD:289987 31/113 (27%)
HAD_like 676..807 CDD:119389 44/219 (20%)
Cation_ATPase_C 873..1051 CDD:279079 31/184 (17%)
ATP_Ca_trans_C 1096..1142 CDD:289209 8/58 (14%)
Atp8b3XP_234937.3 PhoLip_ATPase_N 20..96 CDD:292826 15/70 (21%)
ATPase-Plipid 45..1143 CDD:273734 254/1282 (20%)
Cation_ATPase 483..577 CDD:289987 30/97 (31%)
COG4087 <839..890 CDD:226572 18/52 (35%)
PhoLip_ATPase_C 883..1131 CDD:292829 57/316 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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