DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PMCA and atp2b4

DIOPT Version :9

Sequence 1:NP_001014689.3 Gene:PMCA / 43787 FlyBaseID:FBgn0259214 Length:1255 Species:Drosophila melanogaster
Sequence 2:XP_002934276.2 Gene:atp2b4 / 100487776 XenbaseID:XB-GENE-960658 Length:1257 Species:Xenopus tropicalis


Alignment Length:1280 Identity:745/1280 - (58%)
Similarity:897/1280 - (70%) Gaps:132/1280 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 AQYGISLKQLRELMEHRGREGVMKI----AENGGIHELCKKLYTSPNEGLSGSKADEEHRRETFG 69
            |.||.:|.:||.|||.||.|.|:||    |:..|   ||::|.|||.|||.|:.||.|.||:|||
 Frog    22 ADYGCTLMELRSLMELRGTEAVVKIKECYADTDG---LCRRLKTSPTEGLPGTAADLEKRRQTFG 83

  Fly    70 SNVIPPKPPKTFLTLVWEALQDVTLIILEVAALVSLGLSFYKPADED--------APVLQEEEEH 126
            .|.||||.|||||.|||||||||||||||:||::|||||||:|...:        |....|.|..
 Frog    84 QNFIPPKKPKTFLQLVWEALQDVTLIILEIAAIISLGLSFYRPPGGETEGCGGAAAGAEDEGEAE 148

  Fly   127 HGWIEGLAILISVIVVVIVTAFNDYSKERQFRGLQNRIEGEHKFSVIRGGEVCQISVGDILVGDI 191
            .|||||.|||:||:.||:||||||:|||:||||||:|||.|.||:|:||.:|.||.|.:::||||
 Frog   149 AGWIEGAAILLSVVCVVLVTAFNDWSKEKQFRGLQSRIEQEQKFTVVRGSQVIQIPVAEMVVGDI 213

  Fly   192 AQVKYGDLLPADGCLIQSNDLKVDESSLTGESDHVKKGPDVDPMVLSGTHVMEGSGKMVVTAVGV 256
            ||||||||||.||..||.||||:||||||||||.|:|..|.|||:|||||||||||:|:||||||
 Frog   214 AQVKYGDLLPTDGIFIQGNDLKIDESSLTGESDQVRKSVDKDPMLLSGTHVMEGSGRMLVTAVGV 278

  Fly   257 NSQAGIIFTLLGAAVDEQEAEIKKMKKEAKRANKQKNLTG---------------------ENDG 300
            |||.|||||||||:..|.|   ||.||..|:....:...|                     :|..
 Frog   279 NSQTGIIFTLLGASEAEDE---KKDKKGVKKEEGPQLQVGSTHPPSHPPAATDGAAGANAIDNAN 340

  Fly   301 RSQIKGSQAPSQRETVTSEITKSESEGNHLPQSSSSGAAETG------------HKKEKSVLQAK 353
            .|.:.|.......|::.::  ..:.:|....:.....:||.|            |||||||||.|
 Frog   341 ASLVNGKMQDGNVESIQNK--AKQQDGAAAMEMQPLKSAEGGDGDDKDKKKSNPHKKEKSVLQGK 403

  Fly   354 LTKLAIQIGYAGSTIAVLTVIILIIQFCIKTFVIDEKPW----KNTYANNLVKHLIIGVTVLVVA 414
            |||||:|||.||..::.:|||||::.|.|.|||::::.|    ...|....||..||||||||||
 Frog   404 LTKLAVQIGKAGLVMSAITVIILVLYFAIDTFVVNKRQWLPECTPIYIQYFVKFFIIGVTVLVVA 468

  Fly   415 VPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVVQSYICEK 479
            ||||||||||:||||||||||||||||||||||||||||||||||||||||||||||||:::.:.
 Frog   469 VPEGLPLAVTISLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTVVQAFVGDV 533

  Fly   480 LCKVLPTLSDIPQHVGNLITMGISVNSAYTSNIMAGHNPGDLPIQVGNKTECALLGFVQGLGVKY 544
            ..|.:|....:|....:::...|::||||||.::.....|.||.||||||||.|||||..|...|
 Frog   534 HYKEIPDPDGLPAKTLDVLVHAIAINSAYTSKVLPAEKDGGLPRQVGNKTECGLLGFVLDLKRDY 598

  Fly   545 QSIRDEITEDKFTRVYTFNSVRKSMGTVIPRPNGGYRLYTKGASEIIMKKCAFIYGHEGTLEKFT 609
            |.:|::|.|:|..:|||||||||||.||:...:|.||:|:||||||::|||:......|....|.
 Frog   599 QVVRNKIPEEKLYKVYTFNSVRKSMSTVVKLEDGSYRMYSKGASEIVLKKCSRTLNEAGEPRIFR 663

  Fly   610 RDMQERLIREVIEPMACDGLRTISVAYRDFVPGKAAINEVHIDGEPNWDDEENIMTNLTCLCVVG 674
            ...::.:::.|||||||||||||.:|||||          .:..||:||:|.:|:|:||||.|||
 Frog   664 PRDRDDMVKNVIEPMACDGLRTICIAYRDF----------PMSPEPDWDNENDIVTDLTCLAVVG 718

  Fly   675 IEDPVRPEVPDAIRKCQRAGITVRMVTGDNINTARSIASKCGILRPNDDFLILEGKEFNRRIRDS 739
            ||||||||||:||||||||||||||||||||||||:||.||||:.|.:|||.:||||||||||:.
 Frog   719 IEDPVRPEVPEAIRKCQRAGITVRMVTGDNINTARAIAIKCGIIHPGEDFLCIEGKEFNRRIRNE 783

  Fly   740 NGDIQQHLIDKVWPKLRVLARSSPTDKYTLVKGIIDSTVSENREVVAVTGDGTNDGPALKKADVG 804
            .|:|:|..|||:|||||||||||||||:||||||||||..|.|:|||||||||||||||||||||
 Frog   784 KGEIEQERIDKIWPKLRVLARSSPTDKHTLVKGIIDSTQVEQRQVVAVTGDGTNDGPALKKADVG 848

  Fly   805 FAMGIAGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIAKFLQFQLTVNVVAVIVAFIGACA 869
            ||||||||||||||||||||||||:||||||||||||||||:||||||||||||||||||.|||.
 Frog   849 FAMGIAGTDVAKEASDIILTDDNFTSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFTGACI 913

  Fly   870 VQDSPLKAVQMLWVNLIMDTLASLALATEFPTPDLLLRKPYGRTKPLISRTMMKNILGQALYQLI 934
            .|||||||||||||||||||.||||||||.||..|||||||||.||||||||||||||.|:|||.
 Frog   914 TQDSPLKAVQMLWVNLIMDTFASLALATEPPTESLLLRKPYGRNKPLISRTMMKNILGHAVYQLT 978

  Fly   935 IIFGLLFVGDVILDIESGRGQELNAGPTQHFTIIFNTFVMMTLFNEINARKIHGQRNVIEGLLTN 999
            :||.|||||:.:.:|:|||...|::.|::|:||||||||||.||||||||||||:|||.:|:..|
 Frog   979 LIFTLLFVGEDLFNIDSGRNAPLHSPPSEHYTIIFNTFVMMQLFNEINARKIHGERNVFDGIFRN 1043

  Fly  1000 PIFYTIWIFTMISQVLIIQYGKMAFSTKALTLDQWLWCIFFGIGTLVWGQLITSVPTRKLPKILS 1064
            |||.||.:.|...|::|:|:|...||...|.||||:||||.|.|.|||||:|||:||.:| |.|.
 Frog  1044 PIFCTIVLGTFAIQIVIVQFGGKPFSCSPLQLDQWMWCIFLGFGELVWGQVITSIPTSRL-KFLK 1107

  Fly  1065 WGRGH-------PEEYTDGMNLGEERFDSID-SDKKPRAGQILWIRGLTRLQTQLRVIRAFRSTL 1121
             |.||       |||     .|.|: .:.|| ::::.|.|||||.|||.|:|||:||::||||:|
 Frog  1108 -GAGHLTQKEEIPEE-----ELNED-VEEIDHAERELRRGQILWFRGLNRIQTQIRVVKAFRSSL 1165

  Fly  1122 -EDLNERRSMHSLHSLRSPRTGIPVAVGGGHPLYNFNLLNPNYIKHQQQQEPKLPPQTQLNVSSG 1185
             |.|.:..|..|:|:..:            ||.:..           :..:|.:|          
 Frog  1166 YEGLEKPDSRTSIHNFMT------------HPEFKI-----------EDSQPHIP---------- 1197

  Fly  1186 MMSPDISYIDEDPQQQQRTLHNGLTSQRSSMPSNVPSSNQSFSKI 1230
              ..|.:.::|||          ...|.||.|   ||.|::.:.|
 Frog  1198 --LIDDTDLEEDP----------ALKQNSSQP---PSPNKNNNAI 1227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PMCANP_001014689.3 ATPase-IIB_Ca 1..1057 CDD:273668 690/1096 (63%)
Cation_ATPase_N 36..104 CDD:279080 46/67 (69%)
E1-E2_ATPase 172..448 CDD:278548 166/312 (53%)
Cation_ATPase 505..598 CDD:289987 55/92 (60%)
HAD_like 676..807 CDD:119389 108/130 (83%)
Cation_ATPase_C 873..1051 CDD:279079 123/177 (69%)
ATP_Ca_trans_C 1096..1142 CDD:289209 24/46 (52%)
atp2b4XP_002934276.2 ATPase-IIB_Ca 12..1101 CDD:273668 690/1096 (63%)
ATP_Ca_trans_C 1140..1186 CDD:403580 25/57 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 259 1.000 Domainoid score I1949
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 1374 1.000 Inparanoid score I132
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D115892at2759
OrthoFinder 1 1.000 - - FOG0000362
OrthoInspector 1 1.000 - - otm47598
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X220
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
77.060

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