Protein Alignment Rad23 and RAD23B

DIOPT Version :9

• Sequence 1: NP_001259052.1
• Gene: Rad23 / 43785
• FlyBaseID: FBgn0026777
• Length: 414
• Species: Drosophila melanogaster
• Sequence 2: NP_001185439.1
• Gene: RAD23B / 844304
• AraportID: AT1G79650
• Length: 395
• Species: Arabidopsis thaliana
• Alignment Length: 468
• Identity: 137/468 - (29%)
• Similarity: 212/468 - (45%)
• Gaps: 127/468 - (27%)

  Fly     1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVGSYNVD 64
            |.:|:|.|:...|.|...|..|::.:||.|.:.:|.: |...:|.||:.|.:|.|:.::....|.
plant     1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVT 65

  Fly    65 EKKFIVVMLTRDSSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSSTNTED------SV 123
            |:.|:||||::..|..:..|.||:.|:         .|.|......:..|::.:|..      |.
plant    66 EEGFLVVMLSKSKSGGSAGQASVQTSS---------VSQPVSATTSSTKPAAPSTTQSSPVPASP 121

  Fly   124 LSRETRP-----------LSSDELIG----ELAQASLQSRAESNLLMGDEYNQTVLSMVEMG--- 170
            :..:.:|           |:...|.|    .:||.....:|.|.|:.|....|.|..::|||
plant   122 IPAQEQPAVYAFVFSFAGLAFCPLYGFPKVSMAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGS 186

  Fly   171 YPREQVERAMAASYNNPERAVEYLINGIPAEEGTFYNRLNESTNPSLIP--------SGPQPASA 227
            :.:|.|.||:.|:||||||||:||.:|||            .|....:|        ||..|.
plant   187 WDKETVTRALRAAYNNPERAVDYLYSGIP------------QTAEVAVPVPEAQIAGSGAAPV-- 237

  Fly   228 TSAERSTESNSDP-------------------FEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQ 273
              |..|...||.|                   .||||:..||.|:|::::.||.:|..:||::|:
plant   238 --APASGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGK 300

  Fly   274 TNPALLQLISENQDAFLNMLNQPIDRESESGATVPPVSNARIPSTLDNVDLFSPDLEVATSAQRS 338
            .||.||:||.|||..||.::|:|.:.....|                  |:|
plant   301 QNPQLLRLIQENQAEFLQLVNEPYEGSDGEG------------------DMF------------- 334

  Fly   339 AAGTSAAHQSGSAADNEDLEQPLGVSTIRLNRQDKDAIERLKALGFPEALVLQAYFACEKNEEQA 403
                          |..:.|.|   ..|.:...:::||:||:|:||..|||::|:.||::|||.|
plant   335 --------------DQPEQEMP---HAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELA 382

  Fly   404 ANFLLSSS--FDD 414
            ||:||.:|  |:|
plant   383 ANYLLENSGDFED 395

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rad23	NP_001259052.1	rad23	1..413	CDD:273167	135/465 (29%)
		RAD23_N	1..76	CDD:176400	26/75 (35%)
		UBA1_Rhp23p_like	153..199	CDD:270561	23/48 (48%)
		XPC-binding	242..296	CDD:286376	26/53 (49%)
		UBA2_HR23A	371..411	CDD:270610	21/39 (54%)
RAD23B	NP_001185439.1	rad23	1..392	CDD:273167	135/463 (29%)
		RAD23_N	1..78	CDD:176400	26/76 (34%)
		UBA1_Rad23_plant	166..215	CDD:270562	23/48 (48%)
		XPC-binding	268..323	CDD:286376	26/54 (48%)
		UBA2_RAD23_plant	347..389	CDD:270565	21/41 (51%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	66	1.000	Domainoid score	I3557
eggNOG	1	0.900	-	-		E1_COG5272
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	181	1.000	Inparanoid score	I1449
OMA	1	1.010	-	-		QHG53856
OrthoDB	1	1.010	-	-		D1260050at2759
OrthoFinder	1	1.000	-	-		FOG0001474
OrthoInspector	1	1.000	-	-		otm2754
orthoMCL	1	0.900	-	-		OOG6_101279
Panther	1	1.100	-	-	LDO	PTHR10621
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X1039
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	13	12.840