DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rad23 and UBQ13

DIOPT Version :10

Sequence 1:NP_651918.2 Gene:Rad23 / 43785 FlyBaseID:FBgn0026777 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_176714.4 Gene:UBQ13 / 842845 AraportID:AT1G65350 Length:319 Species:Arabidopsis thaliana


Alignment Length:234 Identity:52/234 - (22%)
Similarity:92/234 - (39%) Gaps:38/234 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPEYVAEKQKLIYAGVILTDDRTVGSYNVDE 65
            |.|.:|.|..:|.|:|.....|:..:|.||.::.|  ...::|:||:||..|.|.||:..||:.:
plant     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQK 63

  Fly    66 KKFIVVMLTRDSSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSSTNTEDSVLSRETRP 130
            :..:.::|......    |:.||.....|.|.:.:           :|.:..|.:..:..:|..|
plant    64 ESTLHLVLRLRGGM----QIFVKTLTGKTITLEVE-----------SSDTIDNVKAKIQDKEGIP 113

  Fly   131 LSSDELI--------GELAQASLQSRAESNLLM----GDEY------NQTVLSMVEMGYPREQVE 177
            .....||        |.....::|..:..:|::    |.:.      .:|:...||.....:.|:
plant   114 PDQQRLIFAGKQLEDGRTLADNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 178

  Fly   178 RAMAASYNNPERAVEYLINGIPAEEG---TFYNRLNEST 213
            ..:......|......:..|...|:|   ..||...|||
plant   179 AKIQDKEWIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad23NP_651918.2 rad23 1..413 CDD:273167 52/234 (22%)
UBQ13NP_176714.4 Ubl_ubiquitin 1..76 CDD:340501 24/76 (32%)
Ubl_ubiquitin 77..151 CDD:340501 14/88 (16%)
Ubl_ubiquitin 152..227 CDD:340501 13/66 (20%)
Ubl1_cv_Nsp3_N-like 228..317 CDD:475130
Blue background indicates that the domain is not in the aligned region.

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