DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rad23 and UBQ12

DIOPT Version :10

Sequence 1:NP_651918.2 Gene:Rad23 / 43785 FlyBaseID:FBgn0026777 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_564675.1 Gene:UBQ12 / 841949 AraportID:AT1G55060 Length:230 Species:Arabidopsis thaliana


Alignment Length:168 Identity:41/168 - (24%)
Similarity:76/168 - (45%) Gaps:34/168 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPEYVAEKQKLIYAGVILTDDRTVGSYNVDE 65
            |.|.:|.|..:|.|:|.....|:..||.||.::.|  ...::|:||:||..|.|.||:..||:.:
plant    77 MQIFVKTLTGKTITLEVESSDTIDNLKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQK 139

  Fly    66 KKFIVVMLTRDSSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSSTNTEDSVLSR--ET 128
            :..:.::|......    |:.||.....|.|.:.:               |::|.|:|.::  :.
plant   140 ESTLHLVLRLRGGM----QIFVKTLTGKTITLEVE---------------SSDTIDNVKAKIQDK 185

  Fly   129 RPLSSDE----LIGE-------LAQASLQSRAESNLLM 155
            ..:|.|:    ..|:       ||..::|..:..:|::
plant   186 EGISPDQQRLIFAGKQHEDGRTLADYNIQKESTLHLVL 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad23NP_651918.2 rad23 1..413 CDD:273167 41/168 (24%)
UBQ12NP_564675.1 Ubl1_cv_Nsp3_N-like 1..76 CDD:475130
Ubl_ubiquitin 77..152 CDD:340501 25/76 (33%)
Ubl_ubiquitin 153..228 CDD:340501 16/90 (18%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.