DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rad23 and UBQ14

DIOPT Version :10

Sequence 1:NP_651918.2 Gene:Rad23 / 43785 FlyBaseID:FBgn0026777 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_849292.1 Gene:UBQ14 / 828148 AraportID:AT4G02890 Length:305 Species:Arabidopsis thaliana


Alignment Length:235 Identity:54/235 - (22%)
Similarity:95/235 - (40%) Gaps:39/235 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPEYVAEKQKLIYAGVILTDDRTVGSYNVDE 65
            |.|.:|.|..:|.|:|.....|:..:|.||.::.|  ...::|:||:||..|.|.||:..||:.:
plant     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQK 63

  Fly    66 KKFIVVMLTRDSSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSSTNTEDSVLSRETRP 130
            :..:.::|......    |:.||.....|.|.:.:           :|.:..|.:..:..:|..|
plant    64 ESTLHLVLRLRGGM----QIFVKTLTGKTITLEVE-----------SSDTIDNVKAKIQDKEGIP 113

  Fly   131 LSSDELI--GE-------LAQASLQSRAESNLLM----GDEY------NQTVLSMVEMGYPREQV 176
            .....||  |:       ||..::|..:..:|::    |.:.      .:|:...||.....:.|
plant   114 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 178

  Fly   177 ERAMAASYNNPERAVEYLINGIPAEEG---TFYNRLNEST 213
            :..:......|......:..|...|:|   ..||...|||
plant   179 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad23NP_651918.2 rad23 1..413 CDD:273167 54/235 (23%)
UBQ14NP_849292.1 Ubl_ubiquitin 1..76 CDD:340501 24/76 (32%)
Ubl_ubiquitin 77..152 CDD:340501 16/89 (18%)
Ubl_ubiquitin 153..228 CDD:340501 13/66 (20%)
Ubl_ubiquitin 229..304 CDD:340501
Blue background indicates that the domain is not in the aligned region.

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