DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rad23 and RAD23C

DIOPT Version :9

Sequence 1:NP_001259052.1 Gene:Rad23 / 43785 FlyBaseID:FBgn0026777 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_186903.1 Gene:RAD23C / 821195 AraportID:AT3G02540 Length:419 Species:Arabidopsis thaliana


Alignment Length:471 Identity:136/471 - (28%)
Similarity:206/471 - (43%) Gaps:123/471 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVGSYNVD 64
            |.|.:|.|:...|.||..||.:|:::||.|...:|.: |.|.||.||:.|.:|.|:.|:....|.
plant     1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVA 65

  Fly    65 EKKFIVVMLTRD------SSSSNRNQLSVKESNKLTSTDDSKQSMPCEEA-------NHTNSPSS 116
            |..|||:|:.:.      :||::......|.....||........|...:       .....|:.
plant    66 ENSFIVIMMNKSKPASAAASSASAGTSQAKSIPPSTSQPSISPQTPASVSAPVAPAPTRPPPPAP 130

  Fly   117 TNTEDSVLSRET----------------RPLSSDELIGELAQASLQSRAESNLLMGDEYNQTVLS 165
            |.|...|.:.||                .|......:|  :|..:..:|.|||..|.....|:..
plant   131 TPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVG--SQGDVYGQAASNLAAGSNLESTIQQ 193

  Fly   166 MVEMG---YPREQVERAMAASYNNPERAVEYLINGI------------PAEEGTFYNRLNESTNP 215
            :::||   :.||.|..|:.|::||||||||||..||            ||..|...|...::..|
plant   194 ILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPANPPAQTQQP 258

  Fly   216 SLIP-SGP-----------------QPASATSAERSTESNSDPFEFLRSQPQFLQMRSLIYQNPH 262
            :..| |||                 .|.:.|            .:|||:..||..:|:::..||.
plant   259 AAAPASGPNANPLDLFPQGLPNVGGNPGAGT------------LDFLRNSQQFQALRAMVQANPQ 311

  Fly   263 LLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIDRESESGATVPPVSNARIPSTLDNVDLFSP 327
            :|..:||::|:.||.|::||.::|..||.::|:|::...|||                       
plant   312 VLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESG----------------------- 353

  Fly   328 DLEVATSAQRSAAGTSAAHQSGSAADNEDLEQPLGVSTIRLNRQDKDAIERLKALGFPEALVLQA 392
                      :..|..||          .:.||   ..|::..::::|||||:|:||..||||:.
plant   354 ----------NLLGQMAA----------GMPQP---QAIQVTHEEREAIERLEAMGFERALVLEV 395

  Fly   393 YFACEKNEEQAANFLL 408
            :|||.||||.|||:||
plant   396 FFACNKNEELAANYLL 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad23NP_001259052.1 rad23 1..413 CDD:273167 136/471 (29%)
RAD23_N 1..76 CDD:176400 30/75 (40%)
UBA1_Rhp23p_like 153..199 CDD:270561 22/60 (37%)
XPC-binding 242..296 CDD:286376 21/53 (40%)
UBA2_HR23A 371..411 CDD:270610 24/38 (63%)
RAD23CNP_186903.1 rad23 1..416 CDD:273167 136/471 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 66 1.000 Domainoid score I3557
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37704
Inparanoid 1 1.050 181 1.000 Inparanoid score I1449
OMA 1 1.010 - - QHG53856
OrthoDB 1 1.010 - - D1260050at2759
OrthoFinder 1 1.000 - - FOG0001474
OrthoInspector 1 1.000 - - otm2754
orthoMCL 1 0.900 - - OOG6_101279
Panther 1 1.100 - - O PTHR10621
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1039
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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