DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rad23 and UBB

DIOPT Version :9

Sequence 1:NP_001259052.1 Gene:Rad23 / 43785 FlyBaseID:FBgn0026777 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_001268645.1 Gene:UBB / 7314 HGNCID:12463 Length:229 Species:Homo sapiens


Alignment Length:240 Identity:58/240 - (24%)
Similarity:99/240 - (41%) Gaps:49/240 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPEYVAEKQKLIYAGVILTDDRTVGSYNVDE 65
            |.|.:|.|..:|.|:|..|..|:..:|.||.::.|  ...::|:||:||..|.|.||:..||:.:
Human     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQK 63

  Fly    66 KKFIVVMLTRDSSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSST--NTEDSVLSRET 128
            :..:.::|......    |:.||.....|.|.:.:             ||.|  |.:..:..:|.
Human    64 ESTLHLVLRLRGGM----QIFVKTLTGKTITLEVE-------------PSDTIENVKAKIQDKEG 111

  Fly   129 RPLSSDELI--GE-------LAQASLQSRAESNLLM----GDEY------NQTVLSMVEMGYPRE 174
            .|.....||  |:       |:..::|..:..:|::    |.:.      .:|:...||   |.:
Human   112 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE---PSD 173

  Fly   175 QVERAMAASYNN---PERAVEYLINGIPAEEG---TFYNRLNEST 213
            .:|...|...:.   |......:..|...|:|   :.||...|||
Human   174 TIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad23NP_001259052.1 rad23 1..413 CDD:273167 58/240 (24%)
RAD23_N 1..76 CDD:176400 25/74 (34%)
UBA1_Rhp23p_like 153..199 CDD:270561 10/58 (17%)
XPC-binding 242..296 CDD:286376
UBA2_HR23A 371..411 CDD:270610
UBBNP_001268645.1 Ubl_ubiquitin 1..76 CDD:340501 25/76 (33%)
Ubl_ubiquitin 77..152 CDD:340501 17/91 (19%)
Ubl_ubiquitin 153..228 CDD:340501 15/69 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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