DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rad23 and RAD23B

DIOPT Version :9

Sequence 1:NP_001259052.1 Gene:Rad23 / 43785 FlyBaseID:FBgn0026777 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_002865.1 Gene:RAD23B / 5887 HGNCID:9813 Length:409 Species:Homo sapiens


Alignment Length:457 Identity:170/457 - (37%)
Similarity:233/457 - (50%) Gaps:92/457 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVGSYNVD 64
            |.:|:|.||||||.|:..||:||..||:||..|:|.: :....|||||||.||.||..:..|.:|
Human     1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKID 65

  Fly    65 EKKFIVVMLTRDSSSSNRNQLSVKES--------NKLTSTDDSKQSMPCEEANHTNSPSSTNTED 121
            ||.|:|||:|:..:.|.....:.::|        ...|:|..::...|......|::|:|.....
Human    66 EKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPAS 130

  Fly   122 SVLSRE----------------------TRPLSSDELIGELAQASLQSRAESNLLMGDEYNQTVL 164
            :..|.|                      |.|.::|...|:.::::|...|.|.|:.|..|...|.
Human   131 ATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVT 195

  Fly   165 SMVEMGYPREQVERAMAASYNNPERAVEYLINGIPAEEGTFYNRLNES----TNPSLIPSG-PQ- 223
            .::.|||.||||..|:.||:|||:||||||:.|||.:        .||    ..|....:| || 
Human   196 EIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGD--------RESQAVVDPPQAASTGAPQS 252

  Fly   224 ------PASATSAERSTESNSDPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLI 282
                  .|:.|:...:|.|...|.||||:||||.|||.:|.|||.||.|:|||||:.||.|||.|
Human   253 SAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQI 317

  Fly   283 SENQDAFLNMLNQPIDRESESGATVPPVSNARIPSTLDNVDLFSPDLEVATSAQRSAAGTSAAHQ 347
            |::|:.|:.|||:|:......|.                               ....|:....:
Human   318 SQHQEHFIQMLNEPVQEAGGQGG-------------------------------GGGGGSGGIAE 351

  Fly   348 SGSAADNEDLEQPLGVSTIRLNRQDKDAIERLKALGFPEALVLQAYFACEKNEEQAANFLLSSSF 412
            :||...|          .|::..|:|:||||||||||||.||:||||||||||..||||||..:|
Human   352 AGSGHMN----------YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNF 406

  Fly   413 DD 414
            |:
Human   407 DE 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad23NP_001259052.1 rad23 1..413 CDD:273167 168/454 (37%)
RAD23_N 1..76 CDD:176400 40/75 (53%)
UBA1_Rhp23p_like 153..199 CDD:270561 24/45 (53%)
XPC-binding 242..296 CDD:286376 35/53 (66%)
UBA2_HR23A 371..411 CDD:270610 32/39 (82%)
RAD23BNP_002865.1 rad23 1..407 CDD:273167 168/454 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 80..175 14/94 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 236..276 8/39 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165159579
Domainoid 1 1.000 77 1.000 Domainoid score I8888
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37704
Inparanoid 1 1.050 258 1.000 Inparanoid score I3144
Isobase 1 0.950 - 0.815465 Normalized mean entropy S1702
OMA 1 1.010 - - QHG53856
OrthoDB 1 1.010 - - D1260050at2759
OrthoFinder 1 1.000 - - FOG0001474
OrthoInspector 1 1.000 - - otm42130
orthoMCL 1 0.900 - - OOG6_101279
Panther 1 1.100 - - O PTHR10621
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1097
SonicParanoid 1 1.000 - - X1039
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1716.750

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