DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rad23 and Ubqln1

DIOPT Version :9

Sequence 1:NP_001259052.1 Gene:Rad23 / 43785 FlyBaseID:FBgn0026777 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_081118.4 Gene:Ubqln1 / 56085 MGIID:1860276 Length:582 Species:Mus musculus


Alignment Length:599 Identity:131/599 - (21%)
Similarity:211/599 - (35%) Gaps:236/599 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MIITIKNLQQQTFTIEFA-PEKTVLELKKKIFEERGPEYVAEKQKLIYAGVILTDDRTVGSYNVD 64
            |.:|:|..:::.   ||| ||.:.::..|:...:|...:: ::..||:||.||.|..|:..:.:.
Mouse    28 MKVTVKTPKEKE---EFAVPENSSVQQFKEEISKRFKSHI-DQLVLIFAGKILKDQDTLSQHGIH 88

  Fly    65 EKKFIVVMLTRDSSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSSTNTEDSVLSRETR 129
            :...:.:::    .:.||.|            |:|        |..||:|.||.|  |..:.::.
Mouse    89 DGLTVHLVI----KTQNRPQ------------DNS--------AQQTNAPGSTVT--SSPAPDSN 127

  Fly   130 PLSSDEL--------IGELAQAS-----------LQSRAESNLLMGDEY------NQTVLSMVE- 168
            |.|....        :|.||..|           |||:.:..||...|.      |..|.||:. 
Mouse   128 PTSGSAANSSFGVGGLGGLAGLSSLGLNTTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSN 192

  Fly   169 --------MGYPREQ--VERAMAASY--NNP-----------------------ERAVE------ 192
                    |..|:.|  ::|....|:  |||                       :||:.      
Mouse   193 PDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIP 257

  Fly   193 -------------------------------YLINGIPAEEGTFYNRLNESTNPSLIPSGPQ--- 223
                                           .|::...:.|||..:| .|:.:|...|..||   
Mouse   258 GGYNALRRMYTDIQEPMLNAAQEQFGGNPFASLVSSSSSAEGTQPSR-TENRDPLPNPWAPQTSQ 321

  Fly   224 --PASATSAERST-------ESNSDPFEFLRSQPQFLQ-----------MRSLIYQ---NPHLLH 265
              |||.|:...:.       .:.|.|.....|.|..:.           |:||:.|   ||.|:.
Mouse   322 SSPASGTTGSTTNTMSTSGGTATSTPAGQSTSGPSLVPGAGASMFNTPGMQSLLQQITENPQLMQ 386

  Fly   266 AVLQQIGQTNP---ALLQLISENQD-AFLNMLNQPID------------------RESESGATVP 308
            .:|     :.|   ::||.:|:|.| |...|||.|:.                  ::.::..|:.
Mouse   387 NML-----SAPYMRSMLQSLSQNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLS 446

  Fly   309 PVSNARIPSTLDNVDL---------------FSPDLEVATSAQRSAAGTSAAHQSGSAADNED-- 356
            .:||.|....|..:..               |:|.|....|.  .::||:|.    |.|.:||  
Mouse   447 AMSNPRAMQALLQIQQGLQTLATEAPGLIPGFTPGLAAGNSG--GSSGTNAP----STAPSEDTN 505

  Fly   357 -------------LEQPL----GVS------TIRLNRQDKDAIERLKALGF--PEALVLQAYFAC 396
                         ::|.|    ||:      .:|..:|    :|:|.|:||  .|| .|||..|.
Mouse   506 PQGGTAEPGHQQFIQQMLQALAGVNPQLQSPEVRFQQQ----LEQLSAMGFLNREA-NLQALIAT 565

  Fly   397 EKNEEQAANFLLSS 410
            ..:...|...||.|
Mouse   566 GGDINAAIERLLGS 579

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad23NP_001259052.1 rad23 1..413 CDD:273167 131/599 (22%)
RAD23_N 1..76 CDD:176400 18/75 (24%)
UBA1_Rhp23p_like 153..199 CDD:270561 18/124 (15%)
XPC-binding 242..296 CDD:286376 20/71 (28%)
UBA2_HR23A 371..411 CDD:270610 16/42 (38%)
Ubqln1NP_081118.4 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25
UBQ 28..98 CDD:214563 18/77 (23%)
hPLIC_N 28..98 CDD:176403 18/77 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 103..136 13/54 (24%)
Interaction with UBXN4. /evidence=ECO:0000250|UniProtKB:Q9UMX0 169..422 54/258 (21%)
STI1 173..210 CDD:128966 8/36 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 286..365 18/79 (23%)
STI1 384..416 CDD:128966 12/36 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 478..513 11/40 (28%)
UBA_PLICs 539..578 CDD:270582 15/43 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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