DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rad23 and Ubqln2

DIOPT Version :9

Sequence 1:NP_001259052.1 Gene:Rad23 / 43785 FlyBaseID:FBgn0026777 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_061268.2 Gene:Ubqln2 / 54609 MGIID:1860283 Length:638 Species:Mus musculus


Alignment Length:473 Identity:100/473 - (21%)
Similarity:178/473 - (37%) Gaps:145/473 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ITIKNLQQQTFTIEFA-PE-KTVLELKKKI---FEERGPEYVAEKQKLIYAGVILTDDRTVGSYN 62
            :|:|..:::.   ||| || .||.:.|:.|   |:.:..:.|     ||:||.||.|..|:..:.
Mouse    35 VTVKTPKEKE---EFAVPENSTVQQFKEAISKRFKSQTDQLV-----LIFAGKILKDQDTLMQHG 91

  Fly    63 VDEKKFIVVMLTRDSSSSNR------NQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSSTNTED 121
            :.:...:.:::    .|.||      .|.|.......|:|..:..:.|.  |..:::|.|::|  
Mouse    92 IHDGLTVHLVI----KSQNRPQGQATTQPSTTAGTSTTTTTTTTAAAPA--ATTSSAPRSSST-- 148

  Fly   122 SVLSRETRPLSSDELIGELAQASLQSRAESNLLMGDEYNQTVLSMVEMGYPREQVERAMAASYNN 186
                 .|...||...:|.|:..       |||.:... |.|.|        :.|:::.:.||   
Mouse   149 -----PTTTNSSSFGLGSLSSL-------SNLGLNSP-NFTEL--------QNQMQQQLLAS--- 189

  Fly   187 PERAVEYLINGIPAEEGTFYNRLNESTNPSLIPSGPQPASATSAERSTESNSDPFEFLRSQPQFL 251
            ||..::.:       |..|...:  .:||.|:.                      :.:.:.|   
Mouse   190 PEMMIQIM-------ENPFVQSM--LSNPDLMR----------------------QLIMANP--- 220

  Fly   252 QMRSLIYQNPHLLHA-----VLQQIGQ--TNPALLQLISENQDAFLN------------------ 291
            ||:.||.:||.:.|.     :::|..:  .|||::|.:..|||..|:                  
Mouse   221 QMQQLIQRNPEISHLLNNPDIMRQTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTD 285

  Fly   292 ----MLNQPIDRESESG---ATVPPVSNA---RIPSTLDNVD-LFSPDLEVATSAQRSAAGTSAA 345
                |||..  :|...|   |||...|.:   ..||..:|.| |.:|.....|:...:...|:..
Mouse   286 IQEPMLNAA--QEQFGGNPFATVGSSSTSGEGTQPSRTENRDPLPNPWAPPPTTQTAATTTTTTT 348

  Fly   346 HQSGSAADNEDLEQPLGVSTIRLN------------------RQDKDAIERLKALGFPEALVLQA 392
            ..|||.:.:.......|.:....|                  .::...|:.:.:..:..:::.  
Mouse   349 TSSGSGSGSSSSSTTAGNTMAAANYVASIFSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQ-- 411

  Fly   393 YFACEKNEEQAANFLLSS 410
              :..:|.:.||..:|||
Mouse   412 --SLSQNPDMAAQMMLSS 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rad23NP_001259052.1 rad23 1..413 CDD:273167 100/473 (21%)
RAD23_N 1..76 CDD:176400 21/77 (27%)
UBA1_Rhp23p_like 153..199 CDD:270561 9/45 (20%)
XPC-binding 242..296 CDD:286376 20/82 (24%)
UBA2_HR23A 371..411 CDD:270610 7/40 (18%)
Ubqln2NP_061268.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31
UBQ 33..103 CDD:214563 21/79 (27%)
hPLIC_N 33..103 CDD:176403 21/79 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 107..158 13/59 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 298..364 16/65 (25%)
STI1 396..440 CDD:128966 7/36 (19%)
11 X 3 AA tandem repeats P-X-X 505..537
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 528..570
UBA_PLICs 595..634 CDD:270582
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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