Protein Alignment Rad23 and CG3223

DIOPT Version :9

• Sequence 1: NP_001259052.1
• Gene: Rad23 / 43785
• FlyBaseID: FBgn0026777
• Length: 414
• Species: Drosophila melanogaster
• Sequence 2: NP_649758.1
• Gene: CG3223 / 40947
• FlyBaseID: FBgn0037538
• Length: 415
• Species: Drosophila melanogaster
• Alignment Length: 360
• Identity: 66/360 - (18%)
• Similarity: 112/360 - (31%)
• Gaps: 132/360 - (36%)

  Fly    68 FIVVMLTRD-SSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPS-------STNTEDSVL 124
            |||..:.:: :.:|:..||..:.:::.|::.:.:.|:....::...|.|       :.|..|.:.
  Fly   169 FIVDTIRKELARNSSATQLQEQAASESTTSSEEENSLGAGSSSSGGSSSTAVAAAAAANRRDEMA 233

  Fly   125 SRETRPLSSDELIGELAQA----SLQSRAESN---LLMGDEYNQTVLSMVEMGYPREQVERAMAA 182
            :  .|.:|..:|...||..    ||.:.|:.|   .:.|||..:|..:.
  Fly   234 N--IRQISRQQLANALANVTPFNSLSNIAQRNADEAVQGDERPRTTSAP---------------- 280

  Fly   183 SYNNPERAVEYLINGIPAEEGTFYNRLNESTNPSLIPSGPQPASATSAERSTESNSDPFEFLRSQ 247
                        :.|:....||                     .|.|:..:..|.|...|.||::
  Fly   281 ------------LAGVGGAAGT---------------------GAGSSSGAISSGSISSELLRNE 312

  Fly   248 PQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIDR-ESESGATVPPVS 311
                            |....|.:.|..||                  |::. |.|||....|..
  Fly   313 ----------------LARAFQSLSQDQPA------------------PVENMEVESGEGPVPEQ 343

  Fly   312 NARIPSTLDNVDLFSPDLEVATSAQRSAAGTSAAHQSGSAADNEDLEQPLGVSTIRLNRQDKDAI 376
            .|..|:  |:||                       ......|:.|: .|......|...|    :
  Fly   344 AATAPA--DDVD-----------------------DEDDGGDDSDV-LPRRYRRHRFTEQ----L 378

  Fly   377 ERLKALGFPEALVLQAYF-ACEKNEEQAANFLLSS 410
            ..:.|:||.......:|. ..:.|.|.|.|.|:.|
  Fly   379 RTMAAMGFINHTQNVSYLELSDGNVEHAINLLMLS 413

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rad23	NP_001259052.1	rad23	1..413	CDD:273167	66/360 (18%)
		RAD23_N	1..76	CDD:176400	3/7 (43%)
		UBA1_Rhp23p_like	153..199	CDD:270561	5/45 (11%)
		XPC-binding	242..296	CDD:286376	8/53 (15%)
		UBA2_HR23A	371..411	CDD:270610	11/41 (27%)
CG3223	NP_649758.1	UBA_like_SF	373..410	CDD:304366	10/40 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5272
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.900